View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_10 (Length: 407)
Name: NF0648_low_10
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 54916500 - 54916135
Alignment:
| Q |
15 |
tatgaatttacaacgtgaacatgcaaacatcttttacacacacagactcaacgaccgacaatctcattgatctaataattttggattcaaattttttcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54916500 |
tatgaatttacaacgtgaacatgcaaacatcttttacacaca--gactcaacgaccgacaatctcattgatctaataattttggattcaaattttttcca |
54916403 |
T |
|
| Q |
115 |
tatgttaattgcatatatagttaataatttgaagttcgttatcttccctttaatatccactatttttataaaggcacaagcaacagtagaacttaatgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54916402 |
tatgttaattgcatatatagttaataatttgaagttcgttatcttccctttaatatccactatttttataaaggcacaagcaacagtagaacttaatgtt |
54916303 |
T |
|
| Q |
215 |
ttgtggtgctttaccatctttactgaagttaccattgtagctctagatgtatccaatttgaact---tcttagatatggattcaaaaacatggatgagtg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54916302 |
ttgtggtgctttaccatctttactgaagttaccattgtagctctagatgtatccaatttgaacttcttcttagatatggattcaaaaacatggatgagtg |
54916203 |
T |
|
| Q |
312 |
ccaatagaatccagaaaactgctcttggtacaccagatgatcgttttcttatattacatgcacataat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54916202 |
ccaatagaatccagaaaactgctcttggtacaccagatgatcgttttcttatattacatgcacataat |
54916135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 54924675 - 54924572
Alignment:
| Q |
278 |
ttcttagatatggattcaaaaacatggat--gagtgccaatagaatccagaaaactgctcttggtacaccagatgatcgttttcttatattacatgcaca |
375 |
Q |
| |
|
|||||||||||||| | ||| |||||||| ||||||||| |||||||||||| ||||| ||||||||||||| |||| |||||| ||||||| |||||| |
|
|
| T |
54924675 |
ttcttagatatggagttaaagacatggatcagagtgccaagagaatccagaaagctgctattggtacaccagaggatcattttctgatattacttgcaca |
54924576 |
T |
|
| Q |
376 |
taat |
379 |
Q |
| |
|
|||| |
|
|
| T |
54924575 |
taat |
54924572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3137 times since January 2019
Visitors: 4028