View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_11 (Length: 402)
Name: NF0648_low_11
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 93 - 293
Target Start/End: Complemental strand, 9799342 - 9799142
Alignment:
| Q |
93 |
tatactatctgttaaacttctggttacaccatagttaactagttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagc |
192 |
Q |
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| T |
9799342 |
tatactatctgttaaacttctggttacaccatagttaactagttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagc |
9799243 |
T |
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| Q |
193 |
acagcttatagagtttgttagttacagatgttatacagttagatagcccctatataaacatatattgtaactaactcttatcattgaataacagaatata |
292 |
Q |
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| T |
9799242 |
acagcttatagagtttgttagttacagatgttatacagttagatagcccctatataaacatatattgtaactaactcttatcattgaataacagaatata |
9799143 |
T |
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| Q |
293 |
c |
293 |
Q |
| |
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| |
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| T |
9799142 |
c |
9799142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 133 - 293
Target Start/End: Complemental strand, 9790287 - 9790124
Alignment:
| Q |
133 |
agttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagcacagcttatagagtttgttagttacagatgttatacagtt |
232 |
Q |
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| T |
9790287 |
agttgtgcaagttaacttgtgctttaagtttcccttaccatgtaccctacatagaatagcacaacttatagagtttgtcagttacagctgttatacagtt |
9790188 |
T |
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| Q |
233 |
ag---atagcccctatataaacatatattgtaactaactcttatcattgaataacagaatatac |
293 |
Q |
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| T |
9790187 |
agatcatatcctctatataaacatatattgtaactaactcacatcattgaataacagaatatac |
9790124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 9799089 - 9799057
Alignment:
| Q |
346 |
atcatcatcaagaagatgatgaacttcatgatg |
378 |
Q |
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| T |
9799089 |
atcatcatcaagaagatgatgaacttcatgatg |
9799057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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