View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_13 (Length: 394)

Name: NF0648_low_13
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_13
NF0648_low_13
[»] chr4 (13 HSPs)
chr4 (54-383)||(41119118-41119447)
chr4 (79-273)||(41125731-41125928)
chr4 (17-71)||(37775318-37775372)
chr4 (22-76)||(50291413-50291467)
chr4 (8-77)||(46355176-46355245)
chr4 (25-75)||(18944419-18944469)
chr4 (22-77)||(1868778-1868833)
chr4 (22-77)||(8614313-8614368)
chr4 (22-77)||(32294637-32294692)
chr4 (8-71)||(54801378-54801441)
chr4 (22-76)||(36110265-36110319)
chr4 (22-70)||(21766678-21766726)
chr4 (12-76)||(43759067-43759130)
[»] chr3 (13 HSPs)
chr3 (8-77)||(2935396-2935465)
chr3 (8-74)||(48205162-48205228)
chr3 (8-74)||(49361725-49361791)
chr3 (8-74)||(48490401-48490467)
chr3 (22-74)||(29555729-29555781)
chr3 (22-77)||(14838930-14838985)
chr3 (10-76)||(9027732-9027798)
chr3 (8-74)||(33972000-33972066)
chr3 (22-76)||(40821746-40821800)
chr3 (22-76)||(44689934-44689988)
chr3 (12-65)||(51385337-51385390)
chr3 (10-74)||(43149231-43149295)
chr3 (8-76)||(43220028-43220096)
[»] chr1 (11 HSPs)
chr1 (8-74)||(1100334-1100400)
chr1 (8-74)||(835988-836054)
chr1 (17-75)||(50796127-50796185)
chr1 (22-76)||(41564766-41564820)
chr1 (17-77)||(11897300-11897360)
chr1 (22-74)||(12990373-12990425)
chr1 (22-75)||(23399876-23399929)
chr1 (8-77)||(27954345-27954414)
chr1 (8-65)||(37947117-37947174)
chr1 (22-75)||(48962117-48962170)
chr1 (17-77)||(21263149-21263209)
[»] chr7 (12 HSPs)
chr7 (10-70)||(25272710-25272770)
chr7 (8-74)||(49142405-49142471)
chr7 (8-68)||(40108241-40108300)
chr7 (12-70)||(33464930-33464987)
chr7 (22-74)||(23034201-23034253)
chr7 (22-76)||(47945114-47945168)
chr7 (22-76)||(47950544-47950598)
chr7 (22-74)||(24380609-24380661)
chr7 (22-74)||(29923802-29923853)
chr7 (22-74)||(48639273-48639325)
chr7 (12-74)||(45335984-45336046)
chr7 (22-74)||(41910073-41910125)
[»] chr5 (13 HSPs)
chr5 (8-76)||(4173010-4173078)
chr5 (10-75)||(9957088-9957153)
chr5 (6-76)||(17574110-17574180)
chr5 (8-65)||(40201018-40201074)
chr5 (8-75)||(20985417-20985483)
chr5 (22-77)||(37821026-37821081)
chr5 (22-76)||(21771359-21771413)
chr5 (8-65)||(12203262-12203319)
chr5 (22-75)||(18729164-18729217)
chr5 (8-65)||(38919963-38920020)
chr5 (8-65)||(12612914-12612971)
chr5 (10-74)||(35616689-35616753)
chr5 (22-74)||(39032492-39032544)
[»] chr2 (22 HSPs)
chr2 (8-75)||(3366148-3366215)
chr2 (8-74)||(37076770-37076836)
chr2 (11-76)||(9384495-9384560)
chr2 (8-73)||(28264645-28264710)
chr2 (15-75)||(12208566-12208626)
chr2 (8-74)||(23141471-23141537)
chr2 (8-74)||(23553261-23553327)
chr2 (8-74)||(30340111-30340177)
chr2 (8-73)||(3681480-3681545)
chr2 (17-76)||(33569694-33569753)
chr2 (22-75)||(28679258-28679311)
chr2 (8-76)||(1277848-1277916)
chr2 (22-74)||(5852589-5852641)
chr2 (22-74)||(26387719-26387771)
chr2 (22-74)||(38598238-38598289)
chr2 (22-76)||(35007987-35008041)
chr2 (10-75)||(8757663-8757728)
chr2 (22-75)||(38027502-38027555)
chr2 (22-74)||(12257032-12257084)
chr2 (28-76)||(13711198-13711245)
chr2 (38-74)||(34141590-34141626)
chr2 (22-78)||(45202016-45202072)
[»] chr8 (11 HSPs)
chr8 (11-74)||(34641673-34641736)
chr8 (22-75)||(25430777-25430830)
chr8 (22-76)||(28713224-28713278)
chr8 (22-76)||(28720571-28720625)
chr8 (22-76)||(28728213-28728267)
chr8 (8-65)||(13924126-13924183)
chr8 (8-65)||(42651037-42651094)
chr8 (22-75)||(18550110-18550163)
chr8 (22-75)||(34838157-34838210)
chr8 (17-65)||(1422599-1422647)
chr8 (20-76)||(23709105-23709161)
[»] scaffold0014 (1 HSPs)
scaffold0014 (22-74)||(145178-145230)
[»] scaffold0514 (1 HSPs)
scaffold0514 (20-74)||(1735-1789)
[»] chr6 (3 HSPs)
chr6 (22-75)||(34792137-34792190)
chr6 (25-76)||(17442956-17443007)
chr6 (8-65)||(608558-608615)
[»] scaffold0119 (1 HSPs)
scaffold0119 (8-76)||(23175-23243)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 54 - 383
Target Start/End: Complemental strand, 41119447 - 41119118
Alignment:
Q  54 gttgttcaaataacactactcttagttctataacctcgtcttcactaaatcgaccagtggtgcgtatcctcttcaagagttcaccacccgcagcatactc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41119447 gttgttcaaataacactactcttagttctataacctcgtcttcactaaatcgaccagtggtgcgtatcctcttcaagagttcaccacccgcagcatactc 41119348  T
Q  154 caagacaatgactagatgagaatgagtaagcaagagctgcagaacagatatctcattcatcattttgttataacttctgaaagctctcaaaaatacaaat 253  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  41119347 caagacaatgactagatgagaaggagtaagcaagacctgcagaacagatatctaattcatcattttgttataacttctgaaagctctcaataatacaaat 41119248  T
Q  254 tggaatctagtttcaccgatgcaaatgattatgacctttcttttagtaatgatgcacaacaccgtataacttttagcgcagaatgatcagatttcaatag 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41119247 tggaatctagtttcaccgatgcaaatgattatgacctttcttttagtaatgatgcacaacaccgtataacttttagcgcagaatgatcaaatttcaatag 41119148  T
Q  354 tacaaagatgctagtagctaggatgttcat 383  Q
    ||||||||||||||||||||||||||||||    
T  41119147 tacaaagatgctagtagctaggatgttcat 41119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 273
Target Start/End: Complemental strand, 41125928 - 41125731
Alignment:
Q  79 ttctataacctcgtcttcactaaatcgaccagtggtgcgtatcctcttcaagagttcaccacccgcagcatactccaagacaatgactagatgagaatga 178  Q
    |||||||||||| ||||||||||||||||||| || || ||||||||  |||||||||||||| | ||||||||||||||||||| ||||||||||| |     
T  41125928 ttctataacctcatcttcactaaatcgaccagcggagcatatcctctcgaagagttcaccaccagaagcatactccaagacaatggctagatgagaaggt 41125829  T
Q  179 gtaagcaagagctgcagaacagatatctc---attcatcattttgttataacttctgaaagctctcaaaaatacaaattggaatctagtttcaccgat 273  Q
    || ||||||| ||||||||||||||||||   ||||||||||   |||||||||||||||||||| || | ||| ||||||||||  | |||||||||    
T  41125828 gtcagcaagacctgcagaacagatatctcaatattcatcattcaattataacttctgaaagctctgaatagtacgaattggaatcgtgcttcaccgat 41125731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 37775372 - 37775318
Alignment:
Q  17 agaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacacta 71  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  37775372 agaataacaaggttgtctcaaaagttgtacgaaaagagttgttcaaataacacta 37775318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 50291413 - 50291467
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  50291413 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaataacactactctt 50291467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 46355245 - 46355176
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||| | |||||| ||| |||||| || ||||||||| |||||||||||||||| |||||||||||||    
T  46355245 tgagaaaagagaataccaaagttgtcccaaaagttgtacaaaaagagttgttcaaacaacactactctta 46355176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 18944419 - 18944469
Alignment:
Q  25 aaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    ||||||||| || ||||||||| |||||||||||||||||| |||||||||    
T  18944419 aaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactct 18944469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 1868833 - 1868778
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||||||||| || |||||||| ||||| ||||||||||||| || ||||||||    
T  1868833 aacaaggttgtcccaaaagttgtagtaaaaaagttgttcaaatatcattactctta 1868778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 8614313 - 8614368
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||||||||| || || |||||| |||| ||||||||||||| |||||||||||    
T  8614313 aacaaggttgtcccaaaaattgtacaaaaaaagttgttcaaatatcactactctta 8614368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 32294692 - 32294637
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||||||||| || || || ||| |||||||||||||||||| |||||||||||    
T  32294692 aacaaggttgtcccaaaaattataccaaaagagttgttcaaatatcactactctta 32294637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 54801441 - 54801378
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacacta 71  Q
    |||||||| |||||||||| |||||| || || || ||  ||||||||||||||||||||||||    
T  54801441 tgagaagagagaataacaaagttgtctcaaaaattatatcaaaagagttgttcaaataacacta 54801378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 36110265 - 36110319
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || || |||||  |||||||||||||||||| ||||||||||    
T  36110265 aacaaggttgtcccaaaaattgtatcaaaagagttgttcaaatatcactactctt 36110319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21766678 - 21766726
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacact 70  Q
    |||||||||||| || ||||| ||| |||||||||||||||||| ||||    
T  21766678 aacaaggttgtcccaaaagttataccaaaagagttgttcaaatatcact 21766726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 43759130 - 43759067
Alignment:
Q  12 aagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||| |||| ||||||||||||| | | ||||||| ||||||||||| |||||| ||||||||||    
T  43759130 aagatagaaaaacaaggttgtcataaaggttgtac-aaaagagttgtacaaatatcactactctt 43759067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 2935465 - 2935396
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2935465 tgagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacactactctta 2935396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 48205162 - 48205228
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48205162 tgagaagaaaaaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacactactc 48205228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 49361791 - 49361725
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  49361791 tgagaagaaagaataacaaagttgtcacaaaagttgtactaaaagagttgttcaaataacactactc 49361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48490467 - 48490401
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  48490467 tgagaagaaaaaataacaagattgtcacaaaagttgtattaaaagagttgttcaaataacactactc 48490401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 29555781 - 29555729
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  29555781 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 29555729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 14838985 - 14838930
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||||||||| || || |||||| |||||||||||||||||| |||||||||||    
T  14838985 aacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactctta 14838930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 9027732 - 9027798
Alignment:
Q  10 agaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||| |||| |||||||||||  || ||||||||| |||| ||||||||||||| || |||||||    
T  9027732 agaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactctt 9027798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 33972000 - 33972066
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||| |||| |||||||||||| || || |||||| |||| ||||||||||||| || |||||    
T  33972000 tgagaagagagaacaacaaggttgtctcaaaaattgtaccaaaatagttgttcaaatatcattactc 33972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 40821800 - 40821746
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || |||||||| ||||| ||||||||||||| || |||||||    
T  40821800 aacaaggttgtcccaaaagttgtagtaaaaaagttgttcaaatatcattactctt 40821746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 44689934 - 44689988
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || ||||||| | |||||| ||||||||||| ||||||||||    
T  44689934 aacaaggttgtcccaaaagttgttccaaaagaattgttcaaatatcactactctt 44689988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 51385390 - 51385337
Alignment:
Q  12 aagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||| |||| |||| ||||||| || |||||||||||||| |||||||||||||    
T  51385390 aagagagaacaacatggttgtcccaaaagttgtactaaaatagttgttcaaata 51385337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 43149295 - 43149231
Alignment:
Q  10 agaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||| |||| |||||||||||  || ||||||||| |||| ||||||||||||| || |||||    
T  43149295 agaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactc 43149231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 43220096 - 43220028
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||| | |||| |||||  ||||| || ||||| |||||||| ||||||||||||| ||||||||||    
T  43220096 tgagaatagagaacaacaaaattgtcccaaaagttatactaaaaaagttgttcaaatatcactactctt 43220028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 1100334 - 1100400
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1100334 tgagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacactactc 1100400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 835988 - 836054
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||| | ||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||    
T  835988 tgagaagagaaaataacaagattgtcccaaaagttgtaccaaaagagttgttcaaataacactactc 836054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 50796127 - 50796185
Alignment:
Q  17 agaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||| |||||||||| || | ||||||| ||||||||||||||||||||||||||||    
T  50796127 agaatatcaaggttgtcccaaatgttgtacaaaaagagttgttcaaataacactactct 50796185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 41564820 - 41564766
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || || |||||| |||||||||||||||||| ||||||||||    
T  41564820 aacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactctt 41564766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 11897300 - 11897360
Alignment:
Q  17 agaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||| ||||||||||||| || |||||  |||||||||||||||||| || ||||||||    
T  11897300 agaatatcaaggttgtcacaaaaattgtaacaaaagagttgttcaaatatcattactctta 11897360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 12990425 - 12990373
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||||||  |||||||||||||||||| ||||||||    
T  12990425 aacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactc 12990373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 23399929 - 23399876
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || || |||||| |||||||||||| ||||| |||||||||    
T  23399929 aacaaggttgtcccaaaaattgtaccaaaagagttgtttaaatatcactactct 23399876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 27954345 - 27954414
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||||| |||| ||||| |||||  || || |||| |||||||| ||||||||||| |||||||||||    
T  27954345 tgagaagagagaacaacaaagttgttccaaaaattgtgctaaaagaattgttcaaatatcactactctta 27954414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 37947174 - 37947117
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| |||| |||||||||||| || ||||||||  |||| |||||||||||||    
T  37947174 tgagaagagagaacaacaaggttgtcccaaaagttgtaacaaaatagttgttcaaata 37947117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 48962117 - 48962170
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || || |||||| |||||||||||||||||| || ||||||    
T  48962117 aacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcaatactct 48962170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 21263149 - 21263209
Alignment:
Q  17 agaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||| |||||||||||| || || |||||| |||| ||||||||||||| |||||| ||||    
T  21263149 agaacaacaaggttgtctcaaaaattgtacaaaaatagttgttcaaatatcactacgctta 21263209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 25272710 - 25272770
Alignment:
Q  10 agaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacact 70  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25272710 agaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacact 25272770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 49142471 - 49142405
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  49142471 tgagaagaaaaaataacaaggttgtcacaaaagttgtaataaaagagttgttcaaataacactactc 49142405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 40108241 - 40108300
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataaca 68  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  40108241 tgagaagaaagaataacaaggttgtcaca-aagttgtactaaaagagttgtttaaataaca 40108300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 33464987 - 33464930
Alignment:
Q  12 aagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacact 70  Q
    |||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  33464987 aagaaaaaataacaaggttgtcacaaaagttgtactaagaga-ttgttcaaataacact 33464930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 23034253 - 23034201
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  23034253 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23034201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 47945114 - 47945168
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || ||||||||  |||||||||||||||||| ||||||||||    
T  47945114 aacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactctt 47945168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 47950544 - 47950598
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || ||||||||  |||||||||||||||||| ||||||||||    
T  47950544 aacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactctt 47950598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 24380661 - 24380609
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||  || ||||||||| |||||||||||||||||| ||||||||    
T  24380661 aacaaggttgttccaaaagttgtaccaaaagagttgttcaaatatcactactc 24380609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 29923802 - 29923853
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  29923802 aacaaggttgtc-caaaagttgtaccaaaagagttgttcaaatatcactactc 29923853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 48639325 - 48639273
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||  || ||||||||| |||||||||||||||||| ||||||||    
T  48639325 aacaaggttgttccaaaagttgtaccaaaagagttgttcaaatatcactactc 48639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 45335984 - 45336046
Alignment:
Q  12 aagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||| |||| |||||||||||| || || |||||| |||||||| ||||||||| ||||||||    
T  45335984 aagagagaacaacaaggttgtcccaaaatttgtaccaaaagagtagttcaaatatcactactc 45336046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 41910125 - 41910073
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||||||  | ||||||||| |||||| ||||||||||| ||||||||    
T  41910125 aacaaggttgtcctaaaagttgtaccaaaagaattgttcaaatatcactactc 41910073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 4173078 - 4173010
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  4173078 tgagaagaaagaataacaaggttgtcacaaaggttgtactaaaagagttgttcaaataactctactctt 4173010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 9957153 - 9957088
Alignment:
Q  10 agaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  9957153 agaagaaagaataataaggttgtcacaaaaattgtactaaaagagttgttcaaataatactactct 9957088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 17574180 - 17574110
Alignment:
Q  6 agtgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    ||||||||||||||| |||||||||||| || ||||||||| |||| ||||||||||||| || |||||||    
T  17574180 agtgagaagaaagaacaacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcattactctt 17574110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 40201074 - 40201018
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||    
T  40201074 tgagaagaaagaataacaaggttgtcacaaaagttgtac-aaaaaaattgttcaaata 40201018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 20985483 - 20985417
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||| ||||||||| || ||| | |||||||||||||| | |||||||||||||||||||||    
T  20985483 tgagaagaaaaaataacaagattatcataaaagttgtactaaaa-aattgttcaaataacactactct 20985417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 37821081 - 37821026
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctta 77  Q
    |||||||||||| || ||||||||| |||| ||||||||||||| |||||||||||    
T  37821081 aacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcactactctta 37821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 21771413 - 21771359
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||    
T  21771413 aacaaggttgtcccaaaagttataccaaaagagttgttcaaatatcactactctt 21771359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 12203262 - 12203319
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| || | |||||| |||||||| ||||||||| ||||||||||||||||||    
T  12203262 tgagaagagaggacaacaagattgtcacaaaagttgtaccaaaagagttgttcaaata 12203319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 18729217 - 18729164
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || ||||||||| ||||||||||||||||||  ||||||||    
T  18729217 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatattactactct 18729164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 38919963 - 38920020
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| |||| ||||||||||||  | ||||||||| ||||||||||||||||||    
T  38919963 tgagaagagagaacaacaaggttgtcctaaaagttgtaccaaaagagttgttcaaata 38920020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 12612971 - 12612914
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| |||| |||||||||||| || ||||||||| ||||  ||||||||||||    
T  12612971 tgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaatggttgttcaaata 12612914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 35616753 - 35616689
Alignment:
Q  10 agaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||| |||| |||||||||||| || || || ||| |||| ||||||||||||| ||||||||    
T  35616753 agaagagagaacaacaaggttgtcccaaaatttataccaaaatagttgttcaaatatcactactc 35616689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 39032544 - 39032492
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || || |||||  |||||||||||||||||| ||||||||    
T  39032544 aacaaggttgtcccaaaaattgtatcaaaagagttgttcaaatatcactactc 39032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 3366148 - 3366215
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  3366148 tgagaagaaagaataataaggttgtcacaaaagttatactaaaagagttgttcaaataacactactct 3366215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 37076770 - 37076836
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  37076770 tgagaagaaagaataacaaggttgtcacaaaaattgtactaaaagagttgttcaaataacattactc 37076836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 9384495 - 9384560
Alignment:
Q  11 gaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9384495 gaagaaagaataacaagattgtcacaaaagttgtattaaaagagttgttcaaataacactactctt 9384560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 28264645 - 28264710
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactact 73  Q
    |||||||| | |||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  28264645 tgagaagagataataacaaggttgtcttaaaagttgtactaaaagagttgttcaaataacactact 28264710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 12208566 - 12208626
Alignment:
Q  15 aaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    ||||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  12208566 aaagaataacaaaattgttacaaaagttgtactaaaagagttgttcaaataacactactct 12208626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 23141471 - 23141537
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||| |||| |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  23141471 tgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23141537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 23553261 - 23553327
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||| |||| |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  23553261 tgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23553327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30340111 - 30340177
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||| |||| |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  30340111 tgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 30340177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 3681480 - 3681545
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactact 73  Q
    |||||||| |||||| |||||||||| || || |||||| ||||||||||||||||||||||||||    
T  3681480 tgagaagagagaatatcaaggttgtcccaaaaattgtacaaaaagagttgttcaaataacactact 3681545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 33569694 - 33569753
Alignment:
Q  17 agaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||| |||||| || ||||||||| ||||||||||||||||||||||| |||||    
T  33569694 agaataacaaagttgtctcaaaagttgtaccaaaagagttgttcaaataacactgctctt 33569753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 28679258 - 28679311
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || ||||||||| |||||||||||||||||| || ||||||    
T  28679258 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcattactct 28679311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 1277848 - 1277916
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||| |||||| |||| |||||  | ||||| ||| ||||||||||||||||||| |||||||||    
T  1277848 tgagaagagagaatatcaagattgtcctaaaagttatacaaaaagagttgttcaaataatactactctt 1277916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 5852589 - 5852641
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||| ||| |||||||||||||||||| ||||||||    
T  5852589 aacaaggttgtcccaaaagttttaccaaaagagttgttcaaatatcactactc 5852641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 26387771 - 26387719
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||||||  |||||||||||||||||| ||||||||    
T  26387771 aacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactc 26387719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 38598289 - 38598238
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||    
T  38598289 aacaaggttgtcacaaaagttatactaaaa-agttgttcaaatatcactactc 38598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 35008041 - 35007987
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || |||||||| ||||| ||||||||||||| || |||||||    
T  35008041 aacaaggttgtcccaaaagttgtagtaaaaaagttgttcaaatatcattactctt 35007987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 8757663 - 8757728
Alignment:
Q  10 agaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||| |||| |||||||||||  || ||||||||| |||| ||||||||||||| || ||||||    
T  8757663 agaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactct 8757728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 38027555 - 38027502
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||  || ||||| |||||||||||||||| ||||| |||||||||    
T  38027555 aacaaggttgtttcaaaagttatactaaaagagttgtttaaatatcactactct 38027502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 12257032 - 12257084
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || || |||||| |||| ||||||||||||| ||||||||    
T  12257032 aacaaggttgtcccaaaaattgtaccaaaaaagttgttcaaatatcactactc 12257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 13711198 - 13711245
Alignment:
Q  28 gttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    ||||||||| ||||||||| |||| ||||||||||||| ||||||||||    
T  13711198 gttgtcacaaaagttgtac-aaaatagttgttcaaatatcactactctt 13711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 34141590 - 34141626
Alignment:
Q  38 aagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  34141590 aagttgtaccaaaagagttgttcaaatatcactactc 34141626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 45202072 - 45202016
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactcttag 78  Q
    |||||||||||| || ||||||||  |||| ||||||||||||| || |||||||||    
T  45202072 aacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactcttag 45202016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 34641673 - 34641736
Alignment:
Q  11 gaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    ||||||||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||||||    
T  34641673 gaagaaagaataacaagattgtcataaaaattgtactaaaaaagttgtttaaataacactactc 34641736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 25430777 - 25430830
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || ||||||||| |||||||||||||||||| |||||||||    
T  25430777 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactct 25430830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28713224 - 28713278
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || || |||||| |||||||||||||||||| ||||||||||    
T  28713224 aacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactctt 28713278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28720571 - 28720625
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || || |||||| |||||||||||||||||| ||||||||||    
T  28720571 aacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactctt 28720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28728213 - 28728267
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||| || || |||||| |||||||||||||||||| ||||||||||    
T  28728213 aacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactctt 28728267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 13924126 - 13924183
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| || | |||||| |||||||| ||||||||| ||||||||||||||||||    
T  13924126 tgagaagagaggacaacaagattgtcacaaaagttgtaccaaaagagttgttcaaata 13924183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 42651037 - 42651094
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| |||| |||||||||||| || ||||||||| |||| |||||||||||||    
T  42651037 tgagaagagagaacaacaaggttgtctcaaaagttgtaccaaaatagttgttcaaata 42651094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 18550110 - 18550163
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || ||||||||| |||| ||||||||||||| || ||||||    
T  18550110 aacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcattactct 18550163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 34838210 - 34838157
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    ||||||||||||  | ||||||||| |||||||||||||||||| |||| ||||    
T  34838210 aacaaggttgtcctaaaagttgtaccaaaagagttgttcaaatatcactgctct 34838157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 1422647 - 1422599
Alignment:
Q  17 agaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    ||||||||||||||||| || ||||||||  |||| |||||||||||||    
T  1422647 agaataacaaggttgtcccaaaagttgtatcaaaatagttgttcaaata 1422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 23709105 - 23709161
Alignment:
Q  20 ataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||||||||| || || |||||  |||| |||||||||||||||| |||||||    
T  23709105 ataacaaggttgtcccaaaaattgtagcaaaaaagttgttcaaataacattactctt 23709161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 145178 - 145230
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  145178 aacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 145230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 1789 - 1735
Alignment:
Q  20 ataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactc 74  Q
    |||||||| ||||| || ||||||||| |||||||||||||||||| ||||||||    
T  1789 ataacaagattgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 34792137 - 34792190
Alignment:
Q  22 aacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactct 75  Q
    |||||||||||| || ||||| ||| |||||||||||||||||| |||||||||    
T  34792137 aacaaggttgtcccaaaagttataccaaaagagttgttcaaatatcactactct 34792190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 17442956 - 17443007
Alignment:
Q  25 aaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    ||||||||| || ||||||||| |||||||||||||||| | ||||||||||    
T  17442956 aaggttgtcccaaaagttgtaccaaaagagttgttcaaaaatcactactctt 17443007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 608615 - 608558
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaata 65  Q
    |||||||| |||| |||||||||||| ||  |||||||| |||| |||||||||||||    
T  608615 tgagaagagagaacaacaaggttgtcccaacagttgtaccaaaatagttgttcaaata 608558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 23243 - 23175
Alignment:
Q  8 tgagaagaaagaataacaaggttgtcacagaagttgtactaaaagagttgttcaaataacactactctt 76  Q
    |||||||| |||||| |||| |||||  | ||||| ||| ||||||||||||||||||| |||||||||    
T  23243 tgagaagagagaatatcaagattgtcctaaaagttatacaaaaagagttgttcaaataatactactctt 23175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University