View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_14 (Length: 392)

Name: NF0648_low_14
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_14
NF0648_low_14
[»] chr7 (1 HSPs)
chr7 (14-368)||(38014806-38015160)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 38014806 - 38015160
Alignment:
Q  14 agatggtgcgagtagaggagaggtgggttggtttctggtcatggggggattgatttgtggtctaaatggtaattggatatgtggttcgtttctctaacta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38014806 agatggtgcgagtagaggagaggtgggttggtttctggtcatggggggattgatttgtggtctaaatggtaattggatatgtggttcatttctctaacta 38014905  T
Q  114 tcttagttattgtaatgcatttgtggccatctttaaaggtttgcgagtagtgcaaaatagatgttttatggtcatagtgatttgtgtagattcagaagtg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38014906 tcttagttattgtaatgcatttgtggccatctttaaaggtttgcgagtagtgcaaaatagaagttttatggtcatagtgatttgtgtagattcagaagtg 38015005  T
Q  214 gttgtgagaagtttgagtcgtggtgacgttgtgaggttggagattgatccataagattcagaatctacttgcgatggattgggagatcaacatatgtggt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  38015006 gttgtgagaagtttgagtcgtggtgacgttgtgaggttggagattgatccataagattcagaatctacttgcgatggtttgggagatcaacatatgtgat 38015105  T
Q  314 tcttattgcgaggcttctcattgagttgatgcatttgctaacatggggtgtgatg 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38015106 tcttattgcgaggcttctcattgagttgatgcatttgctaacatggggtgtgatg 38015160  T

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