View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_2 (Length: 484)
Name: NF0648_low_2
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 12997735 - 12997537
Alignment:
| Q |
9 |
catatattttttggattatgcgtgtctctgctgtgtgagcttcataggttattatgtactatttaatgctataataatattgtgcaaattttgtaatttg |
108 |
Q |
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| T |
12997735 |
catatactttttggattatgcgtgtctctgctgtgtgagcttcataggttattatgtattatttaatgctataataatattgtgcaaattttgtaatttg |
12997636 |
T |
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| Q |
109 |
taggggttctcctaacattgagatggatgaggagactttcatggtgaatagagaaagggcagttgattacttgaactctttggacaaggtgatgattcc |
207 |
Q |
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| T |
12997635 |
taggggttctcctaacattgagatggatgaggagactttcatggtgaatagagaaagggcagttgattacttgaactctttggacaaggtgatgattcc |
12997537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 13072375 - 13072177
Alignment:
| Q |
9 |
catatattttttggattatgcgtgtctctgctgtgtgagcttcataggttattatgtactatttaatgctataataatattgtgcaaattttgtaatttg |
108 |
Q |
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| T |
13072375 |
catatactttttggattatgcgtgtctctgctgtgtgagcttcataggttattatgtattatttaatgctataataatattgtgcaaattttgtaatttg |
13072276 |
T |
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| Q |
109 |
taggggttctcctaacattgagatggatgaggagactttcatggtgaatagagaaagggcagttgattacttgaactctttggacaaggtgatgattcc |
207 |
Q |
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| T |
13072275 |
taggggttctcctaacattgagatggatgaggagactttcatggtgaatagagaaagggcagttgattacttgaactctttggacaaggtgatgattcc |
13072177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 293 - 464
Target Start/End: Complemental strand, 12997450 - 12997279
Alignment:
| Q |
293 |
catcactttcacacaaaaaatggtgatatcattttttaatattttcaagccaaaaacatttagatttcatggcagttaagatgataatgacatagaaatg |
392 |
Q |
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| T |
12997450 |
catcactttcacacaaaaaatggtgatatcattttttaatattttcaagccaaaaacatttagatttcatggcagttaagatgataatgacatagaaatg |
12997351 |
T |
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| Q |
393 |
gtgcatgttgtcattttgtacaagtgggttttacttgaccctttatgtgacataatattatcttgatgatgt |
464 |
Q |
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| T |
12997350 |
gtgcatgttgtcattttgtacaagtgggttttacttgaccctttatgtgacacaatattatcttgatgatgt |
12997279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 293 - 464
Target Start/End: Complemental strand, 13072102 - 13071931
Alignment:
| Q |
293 |
catcactttcacacaaaaaatggtgatatcattttttaatattttcaagccaaaaacatttagatttcatggcagttaagatgataatgacatagaaatg |
392 |
Q |
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| T |
13072102 |
catcactttcacacaaaaaatggtgatatcattttttaatattttcaagccaaaaacatttagatttcatggcagttaagatgataatgacatagaaatg |
13072003 |
T |
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| Q |
393 |
gtgcatgttgtcattttgtacaagtgggttttacttgaccctttatgtgacataatattatcttgatgatgt |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13072002 |
gtgcatgttgtcattttgtacaagtgggttttacttgaccctttatgtgacacaatattatcttgatgatgt |
13071931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 28138846 - 28138753
Alignment:
| Q |
105 |
tttgtaggggttctcctaacattgagatggatgaggagactttcatggtgaatagagaaagggcagttgattacttgaactctttggacaaggt |
198 |
Q |
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| T |
28138846 |
tttgaaggggttcccctaacatcgagatggacgagcacagtttcatggtgaatagggaaagagctgttgattacttgaactctttggacaaggt |
28138753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 51937372 - 51937296
Alignment:
| Q |
110 |
aggggttctcctaacattgagatggatgaggagactttcatggtgaatagagaaagggcagttgattacttgaactc |
186 |
Q |
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|||||||| || || ||||| ||||| ||| | |||||| | || || |||||||| |||||||||||||||||||| |
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| T |
51937372 |
aggggttcaccgaatattgaaatggacgagcatactttcttagtcaacagagaaagagcagttgattacttgaactc |
51937296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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