View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_20 (Length: 360)

Name: NF0648_low_20
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_20
NF0648_low_20
[»] chr6 (9 HSPs)
chr6 (246-354)||(27181132-27181237)
chr6 (246-354)||(27268002-27268107)
chr6 (248-354)||(27352785-27352892)
chr6 (248-354)||(27364898-27365005)
chr6 (248-354)||(27455242-27455349)
chr6 (246-353)||(24297019-24297128)
chr6 (246-353)||(24311050-24311159)
chr6 (305-343)||(30722476-30722514)
chr6 (306-343)||(17093007-17093044)
[»] chr3 (12 HSPs)
chr3 (246-354)||(31027308-31027417)
chr3 (246-354)||(31037729-31037838)
chr3 (248-354)||(32289162-32289270)
chr3 (248-354)||(32299449-32299557)
chr3 (306-343)||(16065294-16065331)
chr3 (305-343)||(19703195-19703233)
chr3 (303-343)||(37186524-37186564)
chr3 (246-293)||(4443760-4443806)
chr3 (303-343)||(15732466-15732507)
chr3 (303-343)||(15747551-15747592)
chr3 (303-343)||(15884010-15884051)
chr3 (303-343)||(15899189-15899230)
[»] chr2 (7 HSPs)
chr2 (246-354)||(31865263-31865372)
chr2 (246-354)||(31895455-31895564)
chr2 (306-343)||(26622082-26622119)
chr2 (246-293)||(34265361-34265408)
chr2 (246-293)||(34308178-34308225)
chr2 (303-343)||(13063405-13063445)
chr2 (303-343)||(20846774-20846815)
[»] chr4 (3 HSPs)
chr4 (248-354)||(24464935-24465042)
chr4 (305-343)||(1641448-1641486)
chr4 (305-343)||(26140646-26140684)
[»] scaffold1901 (1 HSPs)
scaffold1901 (246-354)||(656-764)
[»] scaffold0418 (1 HSPs)
scaffold0418 (246-354)||(3522-3630)
[»] chr5 (6 HSPs)
chr5 (246-353)||(33286491-33286599)
chr5 (246-353)||(33301541-33301649)
chr5 (303-343)||(30914661-30914701)
chr5 (305-343)||(27290909-27290947)
chr5 (303-343)||(18063365-18063405)
chr5 (306-343)||(34498728-34498765)
[»] chr7 (4 HSPs)
chr7 (303-343)||(14227155-14227195)
chr7 (303-343)||(48216270-48216310)
chr7 (303-343)||(13550705-13550745)
chr7 (306-343)||(39149206-39149243)
[»] chr8 (5 HSPs)
chr8 (306-343)||(29035187-29035224)
chr8 (246-336)||(5518147-5518239)
chr8 (246-293)||(19696832-19696879)
chr8 (306-343)||(22141733-22141770)
chr8 (303-343)||(15208712-15208753)
[»] scaffold0260 (1 HSPs)
scaffold0260 (303-343)||(12976-13016)
[»] scaffold1658 (1 HSPs)
scaffold1658 (302-343)||(727-768)
[»] chr1 (2 HSPs)
chr1 (260-293)||(13482918-13482951)
chr1 (303-343)||(21479864-21479905)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 27181132 - 27181237
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggtgattctcagagattctttgcgaatcttcatcatcgaatcgt 345  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  27181132 ttcacataaaccctaactgaaaatca---cagattcatcaaattcatctttttttgggtgattctcagagattctttgcgaatcttcatcatcgaatcgt 27181228  T
Q  346 ctctgctcc 354  Q
    |||||||||    
T  27181229 ctctgctcc 27181237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 27268107 - 27268002
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggtgattctcagagattctttgcgaatcttcatcatcgaatcgt 345  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  27268107 ttcacataaaccctaactgaaaatca---cagattcatcaaattcatctttttttgggtgattctcagagattctttgcgaatcttcatcatcgaatcgt 27268011  T
Q  346 ctctgctcc 354  Q
    |||||||||    
T  27268010 ctctgctcc 27268002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 27352892 - 27352785
Alignment:
Q  248 cacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnn-gggtgattctcagagattctttgcgaatcttcatcatcgaatcgtc 346  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |    
T  27352892 cacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcgaatcttcatcatcgaatcgcc 27352793  T
Q  347 tctgctcc 354  Q
    ||||||||    
T  27352792 tctgctcc 27352785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 27365005 - 27364898
Alignment:
Q  248 cacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnn-gggtgattctcagagattctttgcgaatcttcatcatcgaatcgtc 346  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |    
T  27365005 cacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcgaatcttcatcatcgaatcgcc 27364906  T
Q  347 tctgctcc 354  Q
    ||||||||    
T  27364905 tctgctcc 27364898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 27455349 - 27455242
Alignment:
Q  248 cacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnn-gggtgattctcagagattctttgcgaatcttcatcatcgaatcgtc 346  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |    
T  27455349 cacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcgaatcttcatcatcgaatcgcc 27455250  T
Q  347 tctgctcc 354  Q
    ||||||||    
T  27455249 tctgctcc 27455242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 24297128 - 24297019
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggt--gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||         ||  ||||||||||||||||| ||||||||||||||  ||| |    
T  24297128 ttcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatccttctttttgtacgattctcagagattcttcgcgaatcttcatcactgaacc 24297029  T
Q  344 gtctctgctc 353  Q
    || |||||||    
T  24297028 gtttctgctc 24297019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 24311159 - 24311050
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggt--gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||         ||  ||||||||||||||||| ||||||||||||||  ||| |    
T  24311159 ttcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatccttctttttgtacgattctcagagattcttcgcgaatcttcatcactgaacc 24311060  T
Q  344 gtctctgctc 353  Q
    || |||||||    
T  24311059 gtttctgctc 24311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 30722514 - 30722476
Alignment:
Q  305 gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30722514 gattctcagagattctttgcgaatcttcatcatcgaatc 30722476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 17093044 - 17093007
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17093044 attctcagagattctttgcgaatcttcatcatcgaatc 17093007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 31027417 - 31027308
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  31027417 ttcacataaaccctaactgaaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatcttcatcatcgaatcg 31027318  T
Q  345 tctctgctcc 354  Q
    ||||||||||    
T  31027317 tctctgctcc 31027308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 31037838 - 31037729
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  31037838 ttcacataaatcctaactgaaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatcttcatcatcgaatcg 31037739  T
Q  345 tctctgctcc 354  Q
    ||||||||||    
T  31037738 tctctgctcc 31037729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 248 - 354
Target Start/End: Original strand, 32289162 - 32289270
Alignment:
Q  248 cacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnng--ggtgattctcagagattctttgcgaatcttcatcatcgaatcgt 345  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||     
T  32289162 cacataaaccctaaccgaaaatcatcacagattcatcaaattcatcccttttttttggtgattctcagagattctttgcgaatcttcatcatcgaatcgc 32289261  T
Q  346 ctctgctcc 354  Q
    |||||||||    
T  32289262 ctctgctcc 32289270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 248 - 354
Target Start/End: Original strand, 32299449 - 32299557
Alignment:
Q  248 cacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnng--ggtgattctcagagattctttgcgaatcttcatcatcgaatcgt 345  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||     
T  32299449 cacataaaccctaaccgaaaatcatcacagattcatcaaattcatcccttttttttggtgattctcagagattctttgcgaatcttcatcatcgaatcgc 32299548  T
Q  346 ctctgctcc 354  Q
    |||||||||    
T  32299549 ctctgctcc 32299557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 16065331 - 16065294
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16065331 attctcagagattctttgcgaatcttcatcatcgaatc 16065294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 19703195 - 19703233
Alignment:
Q  305 gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19703195 gattctcagagattctttgcgaaccttcatcatcgaatc 19703233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 37186564 - 37186524
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  37186564 gtgattctcagagattctgtgcgaatcttcatcgtcgaatc 37186524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 4443760 - 4443806
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 293  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  4443760 ttcacataaaccctaaccgaaa-tcatcacaaattcatcaaattcatc 4443806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 15732507 - 15732466
Alignment:
Q  303 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15732507 gtgattctcagagattcttttgcgaatcgtcatcatcgaatc 15732466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  303 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15747592 gtgattctcagagattcttttgcgaatcgtcatcatcgaatc 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 15884051 - 15884010
Alignment:
Q  303 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15884051 gtgattctcagagattcttttgcgaatcatcatcatcgaatc 15884010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 15899230 - 15899189
Alignment:
Q  303 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15899230 gtgattctcagagattcttttgcgaatcatcatcatcgaatc 15899189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 31865372 - 31865263
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  31865372 ttcacataaaccctaactgaaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatcttcatcatcgaatcg 31865273  T
Q  345 tctctgctcc 354  Q
    ||||||||||    
T  31865272 tctctgctcc 31865263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 31895564 - 31895455
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  31895564 ttcacataaaccctaactgaaaatcatcacaaattcatcaaattcatcttccttttgtgtgattctcagagattctttgcgaatcttcatcatcgaatcg 31895465  T
Q  345 tctctgctcc 354  Q
    ||||||||||    
T  31895464 tctctgctcc 31895455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 26622119 - 26622082
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26622119 attctcagagattctttgcgaatcttcatcatcgaatc 26622082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 34265408 - 34265361
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 293  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||    
T  34265408 ttcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatc 34265361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 34308225 - 34308178
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 293  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||    
T  34308225 ttcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatc 34308178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 13063405 - 13063445
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  13063405 gtgattctcagagattctgtgcgaatcatcatcatcgaatc 13063445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 20846774 - 20846815
Alignment:
Q  303 gtgattctcagagattc-tttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  20846774 gtgattctcagagattcttttgcgaatcntcatcatcgaatc 20846815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 24465042 - 24464935
Alignment:
Q  248 cacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnn-gggtgattctcagagattctttgcgaatcttcatcatcgaatcgtc 346  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |    
T  24465042 cacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcgaatcttcatcatcgaatcgcc 24464943  T
Q  347 tctgctcc 354  Q
    ||||||||    
T  24464942 tctgctcc 24464935  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 1641448 - 1641486
Alignment:
Q  305 gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1641448 gattatcagagattctttgcgaatcttcatcatcgaatc 1641486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 26140684 - 26140646
Alignment:
Q  305 gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  26140684 gattctcagagattctttgcgaaccttcatcatcgaatc 26140646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1901 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold1901
Description:

Target: scaffold1901; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 764 - 656
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  764 ttcacataaaccctaacc-aaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatcttcatcatcgaatcg 666  T
Q  345 tctctgctcc 354  Q
    ||||||||||    
T  665 tctctgctcc 656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 3630 - 3522
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  3630 ttcacataaaccctaacc-aaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatcttcatcatcgaatcg 3532  T
Q  345 tctctgctcc 354  Q
    ||||||||||    
T  3531 tctctgctcc 3522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 33286491 - 33286599
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||       || | ||||||||||||||||| | |||||||||||| |||| ||    
T  33286491 ttcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatcattttttggtgcgattctcagagattcttcgtgaatcttcatcaccgaaccg 33286590  T
Q  345 tctctgctc 353  Q
     ||||||||    
T  33286591 cctctgctc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 33301541 - 33301649
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatcttcatcatcgaatcg 344  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||       || | ||||||||||||||||| | |||||||||||| |||| ||    
T  33301541 ttcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatcattttttggtgcgattctcagagattcttcgtgaatcttcatcaccgaaccg 33301640  T
Q  345 tctctgctc 353  Q
     ||||||||    
T  33301641 cctctgctc 33301649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 30914701 - 30914661
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30914701 gtgattctcagagattctttgcgaatcttcatcatcgaatc 30914661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 27290947 - 27290909
Alignment:
Q  305 gattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27290947 gattctcagagattctttgcgaaccttcatcatcgaatc 27290909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 18063405 - 18063365
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  18063405 gtgattctcagagattctgtgcgaatcatcatcatcgaatc 18063365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 34498765 - 34498728
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  34498765 attctcaaagattctttgcgaaccttcatcatcgaatc 34498728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 14227195 - 14227155
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14227195 gtgattctcagagattctttgcgaatcttcatcatcgaatc 14227155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 48216270 - 48216310
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48216270 gtgattctcagagattctttgcgaatcttcatcatcgaatc 48216310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 13550745 - 13550705
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  13550745 gtgattctcagagattctttgcgaatcatcatcatcgaatc 13550705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 39149206 - 39149243
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  39149206 attctcagagattctctgcgaatcttcatcatcgaatc 39149243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 29035187 - 29035224
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29035187 attctcagagattctttgcgaatcttcatcatcgaatc 29035224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 336
Target Start/End: Complemental strand, 5518239 - 5518147
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatc--nnnnnnngggtgattctcagagattctttgcgaatcttcatca 336  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||         | | ||||||||||||||||| ||||||||||||||    
T  5518239 ttcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatcattctttttgtgcgattctcagagattcttcgcgaatcttcatca 5518147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 19696832 - 19696879
Alignment:
Q  246 ttcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 293  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||    
T  19696832 ttcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatc 19696879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 22141733 - 22141770
Alignment:
Q  306 attctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  22141733 attctcaaagattctttgcgaatcttcatcatcgaatc 22141770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 15208712 - 15208753
Alignment:
Q  303 gtgattctcagagattc-tttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  15208712 gtgattctcagagattcttttgcgaatcgtcatcatcgaatc 15208753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 13016 - 12976
Alignment:
Q  303 gtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  13016 gtgattctcagagattcttcgcgaatcttcatcatcgaatc 12976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1658 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1658
Description:

Target: scaffold1658; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 727 - 768
Alignment:
Q  302 ggtgattctcagagattctttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  727 ggtgattctcagagattctttgcaaatcttcgtcatcgaatc 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 13482951 - 13482918
Alignment:
Q  260 aactgaaaatcatcacagattcatcaaattcatc 293  Q
    ||||||||||||||||| ||||||||||||||||    
T  13482951 aactgaaaatcatcacaaattcatcaaattcatc 13482918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 21479864 - 21479905
Alignment:
Q  303 gtgattctcagagattc-tttgcgaatcttcatcatcgaatc 343  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  21479864 gtgattctcagagattcttttgcgaatcatcatcatcgaatc 21479905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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