View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_22 (Length: 332)

Name: NF0648_low_22
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_22
NF0648_low_22
[»] chr3 (6 HSPs)
chr3 (12-317)||(19199131-19199437)
chr3 (39-249)||(6777837-6778048)
chr3 (24-240)||(1596237-1596454)
chr3 (24-240)||(34437781-34437997)
chr3 (253-300)||(34437674-34437721)
chr3 (35-124)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (22-245)||(43782700-43782924)
chr1 (24-240)||(48999827-49000044)
chr1 (24-245)||(45152677-45152899)
chr1 (24-164)||(40553596-40553736)
chr1 (12-249)||(3375894-3376131)
chr1 (35-164)||(33297214-33297343)
chr1 (253-305)||(45152954-45153005)
chr1 (251-301)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-245)||(180324-180558)
[»] chr7 (3 HSPs)
chr7 (24-243)||(12627421-12627641)
chr7 (12-250)||(1326840-1327079)
chr7 (33-164)||(38457493-38457624)
[»] chr5 (8 HSPs)
chr5 (60-243)||(26653528-26653712)
chr5 (60-243)||(26925113-26925297)
chr5 (34-240)||(13274093-13274300)
chr5 (24-164)||(2742997-2743137)
chr5 (108-164)||(21101423-21101479)
chr5 (35-156)||(24209211-24209332)
chr5 (253-317)||(26653769-26653833)
chr5 (253-317)||(26925354-26925418)
[»] chr8 (3 HSPs)
chr8 (24-249)||(37227721-37227947)
chr8 (33-179)||(14096700-14096846)
chr8 (253-300)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (33-249)||(31116886-31117103)
chr2 (12-143)||(28035635-28035766)
chr2 (253-300)||(28035925-28035972)
chr2 (253-311)||(31116777-31116835)
[»] chr4 (11 HSPs)
chr4 (33-155)||(25147344-25147466)
chr4 (24-240)||(42705139-42705356)
chr4 (23-164)||(39465347-39465486)
chr4 (245-300)||(3681088-3681143)
chr4 (253-300)||(25147612-25147659)
chr4 (253-300)||(32305590-32305637)
chr4 (253-300)||(39465623-39465670)
chr4 (24-130)||(32307880-32307986)
chr4 (24-117)||(3680825-3680918)
chr4 (127-164)||(32305774-32305811)
chr4 (253-297)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (33-244)||(16977-17192)
scaffold0251 (253-300)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (33-179)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (24-164)||(6285814-6285954)
chr6 (60-177)||(35014337-35014454)
chr6 (35-125)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (93-164)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (35-133)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 19199131 - 19199437
Alignment:
Q  12 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 111  Q
    ||||||||| |||||||||||||||| || |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19199131 agagacaacgagacattacgtccttttagaacatatgctagtgctccggatggatcatggccggcaaatacaagagggtatgtcacttgccagagtgggt 19199230  T
Q  112 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 210  Q
    | ||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  19199231 tcttaggcagtactagtatgtccaaactgttcccaggcctcctacaaacattgggcctcttacggcaggggacgtggttatggccttcgcagagtttgct 19199330  T
Q  211 ctacatgccctcagccagcaggagaggggtgatctagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagatgat 310  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||    
T  19199331 ctacatgtcctcagccagtaggagaggggtgatctatttttgtagagtatcacatcctattatgaacccccctgcgtccattcctgactacacagttgat 19199430  T
Q  311 gtccatc 317  Q
    | |||||    
T  19199431 gcccatc 19199437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 6777837 - 6778048
Alignment:
Q  39 aggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagac 138  Q
    |||||||||||| || |||  ||||||||||||||| |||  ||| || |||  ||||||||| | || ||||| |||||||||||| ||||||| ||||    
T  6777837 aggacatatgctggtgctccggatggatcatggccgacaacgacaggatggtccgtcacttgctagagagggttcttaggcagtacgggtatgtccagac 6777936  T
Q  139 tattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagagg 237  Q
    |||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   ||||||| | |||||| ||||||||| ||||||||| ||| |||||    
T  6777937 tattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcacggagtttgctctacatgtcctcagccatcagcagagg 6778036  T
Q  238 ggtgatctagtt 249  Q
    ||||||| ||||    
T  6778037 ggtgatccagtt 6778048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 1596454 - 1596237
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||||| |||   ||| || |||  ||||||||||| || ||||| ||||||||||    
T  1596454 acatcacgccctttcaggacatatgctggtactccggatggatcatggccagcagcgacaggatggtccgtcacttgccaaagcgggttcttaggcagta 1596355  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 222  Q
    |  ||||||| |||||||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   |||||||   |||||| ||||||||| ||||    
T  1596354 caggtatgtccagactattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcatggagtttgctctacatgtcctc 1596255  T
Q  223 agccagcaggagaggggt 240  Q
    | ||| ||| ||||||||    
T  1596254 acccatcagcagaggggt 1596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 34437997 - 34437781
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||| ||| |    || || |||  |||| || ||| || ||||| ||||||||||    
T  34437997 acatcacgccctttcaggacatatgctggtactccggatggatcatggtcggtagtggcaggatggtccgtcaatttccagagcgggttcttaggcagta 34437898  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 222  Q
    || ||||||  |||||||||||||| ||||||| ||||||| || | || |||| |  ||||| || | || |||| | |||||| ||||||||| ||||    
T  34437897 cgggtatgtacagactattcccagggctcctactgacattgagcttattgcggcggatgacgtggcca-ggtcttcacggagtttgctctacatgtcctc 34437799  T
Q  223 agccagcaggagaggggt 240  Q
    ||||| ||||| ||||||    
T  34437798 agccatcaggataggggt 34437781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 34437721 - 34437674
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  34437721 tagagtatcacatcctattgtgaacctccctgcgcccattcctgacta 34437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 21565966 - 21566054
Alignment:
Q  35 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtac 124  Q
    ||||||||| | |||| ||||||| ||||||||||||||| |||| | |||| ||| |||||||||||  || ||||| | |||||||||    
T  21565966 tttcaggacgtgtgct-gtactctggatggatcatggccgacaaacaaaagatggtgtgtcacttgcccgagcgggttctgaggcagtac 21566054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 43782924 - 43782700
Alignment:
Q  22 agacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcag 121  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||||| |||||||||||| || | ||| |||||||     
T  43782924 agacattacgccctttcacgacatatgctagtactctggatggatcatggtcggcaaagacatgagggtctgtcacttgccagagcgagttcttaggcaa 43782825  T
Q  122 tacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccc 220  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||| || || ||||||| |||||||||| |   |||||| ||||||||| ||    
T  43782824 tacgagtatgtccagactatacccatgcctcctacagacattgggcctcttgcgtcaagggacgtggctatggcctccatggagtttgctctacatgtcc 43782725  T
Q  221 tcagccagcaggagaggggtgatct 245  Q
    |||||||||||||||||||||||||    
T  43782724 tcagccagcaggagaggggtgatct 43782700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 48999827 - 49000044
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||||||||||  ||| || |||  ||||||||||| || ||||| ||||||||||    
T  48999827 acatcacgccctttcaggacatatgctggtactccggatggatcatggccggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagta 48999926  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 222  Q
    || |||||||||||||||||||||| ||||||||||||||| || | || |||| |  ||||| |||  ||||||| | |||||| ||||||||| ||||    
T  48999927 cgggtatgtctagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggctcaggccttcacggagtttgctctacatgtcctc 49000026  T
Q  223 agccagcaggagaggggt 240  Q
    ||||| ||||| ||||||    
T  49000027 agccatcaggataggggt 49000044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 45152677 - 45152899
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| |||||||||||||||| | |||||| ||||||||||||||||||||| ||| | ||||   | |||||| | || ||||| |||||||||     
T  45152677 acatcacgccctttcaggacatatgttggtactccagatggatcatggccggcaaagacatgcgggttcattacttgctagagcgggttcttaggcagtt 45152776  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 222  Q
    || ||||||| ||||| |||| |||| |||||||||||||||||||||| || ||| ||| || ||||||||||||   |||||| |||||||||  |||    
T  45152777 cgggtatgtccagactgttcctaggcatcctacagacattgggcctcttgcgacagcggatgtggctatggccttcatggagtttgctctacatgttctc 45152876  T
Q  223 agccagcaggagaggggtgatct 245  Q
    ||||| | ||||| |||||||||    
T  45152877 agccaactggagatgggtgatct 45152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 40553736 - 40553596
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| ||||||| |||||||||| ||||||  ||||||||||||||||||   ||| || |||  ||||||||||| || ||||| ||||||||||    
T  40553736 acatcacgccctttcatgacatatgctggtactccggatggatcatggccggcagcgacaggatggtccgtcacttgccagagcgggttcttaggcagta 40553637  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattg 164  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  40553636 cgagtatgtccagactattcccagggctcctacagacattg 40553596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 3376131 - 3375894
Alignment:
Q  12 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 111  Q
    |||||| || ||||||  || |||||||||||||||  | ||||||  |||||||||||||||| | | ||| || |||  ||||||||||| || ||||    
T  3376131 agagacgacgagacatggcgccctttcaggacatattttggtactccggatggatcatggccggtagagacaggatggtccgtcacttgccagagcgggt 3376032  T
Q  112 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttct 210  Q
    | ||||||| |||  ||||||| |||||  ||||||  |||||||||| ||||||||||||  | ||| ||| || |||||| |||||   ||| |||||    
T  3376031 tcttaggcaatacatgtatgtccagactggtcccagagctcctacagatattgggcctcttgtgccagaggaggtggctatgaccttcatggagttttct 3375932  T
Q  211 ctacatgccctcagccagcaggagaggggtgatctagtt 249  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  3375931 ctacatgtcctcagccagcaggaga-gggtgatctagtt 3375894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 33297343 - 33297214
Alignment:
Q  35 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 134  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||   ||| || |||  ||||||||||| || ||||| |||||||||||| ||||| |     
T  33297343 tttcaggacatatgctggtactccggatggatcatggccgacagcgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgacc 33297244  T
Q  135 agactattcccaggcctcctacagacattg 164  Q
    |||||||||||||| |||||||||||||||    
T  33297243 agactattcccagggctcctacagacattg 33297214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 45152954 - 45153005
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacag 305  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||||||    
T  45152954 tagagtatcacatcctattgtgaacc-ccctgcggccattcctgactacacag 45153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 3375845 - 3375795
Alignment:
Q  251 tgtagagtatcacatcctattatgaacctccatgcgtccattcctgactac 301  Q
    ||||||||| ||||||||||| |||||| || |||| ||||||||||||||    
T  3375845 tgtagagtagcacatcctattgtgaacccccctgcggccattcctgactac 3375795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 180558 - 180324
Alignment:
Q  12 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 111  Q
    |||||| || |||||||| | |||||||||||||||| | ||||||  ||||||||||||||| |||| ||| |||||| |||||||||||| || ||||    
T  180558 agagacgacgagacattatgccctttcaggacatatgttggtactccggatggatcatggccgccaaagacaggagggtctgtcacttgccagagcgggt 180459  T
Q  112 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 210  Q
    | |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||| | |||||| |||||   |||||| ||    
T  180458 tcttaggcagtacgggtatgtctagactgttcccaggcctcctacaaacattgggcctcttgtggcaggggacatggctatgaccttcatggagtttgct 180359  T
Q  211 ctacatgccctcagccagcaggagaggggtgatct 245  Q
    ||||||| |||||||||||||||||||||||||||    
T  180358 ctacatgtcctcagccagcaggagaggggtgatct 180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 12627421 - 12627641
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||| ||| || |||  ||||||||||| |||||||| ||| ||||||    
T  12627421 acatgacgcccttttaggacatatggtggtactctagatggatcatggccggcaaagacaggatggttcgtcacttgccagagtgggttcttatgcagta 12627520  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctc 222  Q
    |  ||||| | ||||| |||||||||||||||||||||||||| || || || ||| ||  || ||||||||||||   ||| |||||||||||| ||||    
T  12627521 caggtatgcccagactgttcccaggcctcctacagacattgggactgttgcgccagaggcggtggctatggccttcatggagttttctctacatgtcctc 12627620  T
Q  223 agccagcaggagaggggtgat 243  Q
    ||||| ||  |||||||||||    
T  12627621 agccaacaacagaggggtgat 12627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 1327079 - 1326840
Alignment:
Q  12 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 111  Q
    |||||| || |||||||||  |||||||||||||||| | ||||||  |||||||||||||| ||| | ||||||||||  ||||||||||| |  |||     
T  1327079 agagacgacgagacattacaccctttcaggacatatgttggtactccggatggatcatggcctgcagagacaagagggtccgtcacttgccagaacggga 1326980  T
Q  112 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 210  Q
    | |||||||||| | ||||||| | | | ||| || ||||||||||||||||||||||||  || ||||||| || | || |||||||   |||||| ||    
T  1326979 ttttaggcagtatgggtatgtccaaattgttcacatgcctcctacagacattgggcctctggcgccaggggaggtggttacggccttcatggagtttgct 1326880  T
Q  211 ctacatgccctcagccagcaggagaggggtgatctagttt 250  Q
    ||||||| ||||||||| ||||||||||||||||| ||||    
T  1326879 ctacatgtcctcagccaacaggagaggggtgatctggttt 1326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 38457493 - 38457624
Alignment:
Q  33 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 132  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || |||  ||||||||||| ||| |||| |||||||||||| |||| |    
T  38457493 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacatgatggtccgtcacttgccagagttggttcttaggcagtacgggtatat 38457592  T
Q  133 ctagactattcccaggcctcctacagacattg 164  Q
      |||||||||||||  |||||||||||||||    
T  38457593 tcagactattcccagcgctcctacagacattg 38457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 26653528 - 26653712
Alignment:
Q  60 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 159  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26653528 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26653627  T
Q  160 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 243  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26653628 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 26925113 - 26925297
Alignment:
Q  60 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 159  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26925113 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26925212  T
Q  160 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 243  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26925213 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26925297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 13274093 - 13274300
Alignment:
Q  34 ctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 133  Q
    |||| |||||||||||| |||||| |||||||||||||||||||   ||| ||  ||  ||||||||||| || ||||| |||||||||||| |||||||    
T  13274093 cttttaggacatatgctggtactccagatggatcatggccggcagcgacaggattgtccgtcacttgccagagcgggttcttaggcagtacgggtatgtc 13274192  T
Q  134 tagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctcagccagcagg 232  Q
     |||||||||||||| ||||||||| ||||| || | || |||  |  ||||| ||   ||||||| ||||| |||||||||||| ||||||||| ||||    
T  13274193 cagactattcccagggctcctacagccattgagcttattgcggtggatgacgtggcctaggccttcacagagttttctctacatgtcctcagccatcagg 13274292  T
Q  233 agaggggt 240  Q
    | ||||||    
T  13274293 ataggggt 13274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 2742997 - 2743137
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| |||||||||||||||||| ||||||  ||||||||||| ||||||   ||| || |||   ||||||| || || ||||| ||||| ||||    
T  2742997 acatcacgccctttcaggacatatgctggtactccggatggatcatgaccggcagcgacaggatggtccatcacttgtcagagcgggttcttaggaagta 2743096  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattg 164  Q
    || ||||||| | ||||||| |||| |||||||||||||||    
T  2743097 cgggtatgtccaaactattctcagggctcctacagacattg 2743137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 21101423 - 21101479
Alignment:
Q  108 gggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 164  Q
    ||||| |||||||||||| ||||||| |||||||||| ||| |||||||||||||||    
T  21101423 gggttcttaggcagtacgtgtatgtccagactattcctagggctcctacagacattg 21101479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 24209332 - 24209211
Alignment:
Q  35 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 134  Q
    |||| ||||||||||| ||||||  ||||||||||| ||| |||| ||| || |    ||||||||||| || ||||| | ||||||||||| |||| ||    
T  24209332 tttcgggacatatgctggtactccggatggatcatgaccgacaaagacaggatgtgccgtcacttgccagagcgggttctgaggcagtacgactatgcct 24209233  T
Q  135 agactattcccaggcctcctac 156  Q
    |||| |||| ||| ||||||||    
T  24209232 agaccattcacagacctcctac 24209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 26653769 - 26653833
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagatgatgtccatc 317  Q
    ||||||||||||||||||| |||||| || ||   |||||||||||||||||| ||||| |||||    
T  26653769 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttgatgcccatc 26653833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 26925354 - 26925418
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagatgatgtccatc 317  Q
    ||||||||||||||||||| |||||| || ||   |||||||||||||||||| ||||| |||||    
T  26925354 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttgatgcccatc 26925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 37227947 - 37227721
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| ||||| |||||||||||||||||||  ||||||||||||||| ||   ||| || |||   |||||||||| || ||||| ||||||||||    
T  37227947 acatcacgcccttttaggacatatgctagtactccggatggatcatggccgacatcgacaggatggtccctcacttgccagagcgggttcttaggcagta 37227848  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 222  Q
    || ||||||| |||||||||||||| ||||||||||||||| || | || |||| |  ||||| ||   ||||||| | |||||| ||||||||| ||||    
T  37227847 cgggtatgtccagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggcccaggccttcacggagtttgctctacatgtcctc 37227748  T
Q  223 agccagcaggagaggggtgatctagtt 249  Q
    ||||| || || |||||| ||| ||||    
T  37227747 agccatcaagataggggtcatccagtt 37227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 14096700 - 14096846
Alignment:
Q  33 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 132  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||   |||  | |||  ||||||||||| || || || |||||||||||  ||||||    
T  14096700 cctttcaggacataagctagtactccagatggatcatggccgacagcgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgt 14096799  T
Q  133 ctagactattcccaggcctcctacagacattgggcctcttacggcag 179  Q
    | |||||||||||  ||||||||||||||||| || |||| ||||||    
T  14096800 ccagactattcccttgcctcctacagacattgagcttcttgcggcag 14096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 37227670 - 37227623
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  37227670 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 37227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 249
Target Start/End: Complemental strand, 31117103 - 31116886
Alignment:
Q  33 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 132  Q
    |||||||||| ||||||| |||||   ||||||||||||||| || | | | || ||| |||||||||||| ||| |||| |||||||||||| ||||||    
T  31117103 cctttcaggatatatgctggtacttcggatggatcatggccgacagagataggatggtctgtcacttgccagagtcggttcttaggcagtacgggtatgt 31117004  T
Q  133 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcag 231  Q
    | ||||    |||||||||||||||||||||  ||||||||||||||  ||||| ||   | |||||  ||||||| ||||||||| ||||||||| |||    
T  31117003 ccagacacggcccaggcctcctacagacattaagcctcttacggcagatgacgtggcccagaccttcatagagtttgctctacatgtcctcagccatcag 31116904  T
Q  232 gagaggggtgatctagtt 249  Q
     |||||||| ||| ||||    
T  31116903 cagaggggttatccagtt 31116886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 28035635 - 28035766
Alignment:
Q  12 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 111  Q
    |||||| |||| |||| ||| ||||||| |||||||||| ||||||  ||| ||||||||||||||   ||| || |||  ||||||||| | || ||||    
T  28035635 agagacgacaacacatcacgccctttcaagacatatgctggtactccggatagatcatggccggcagcgacatgatggtccgtcacttgctagagcgggt 28035734  T
Q  112 tattaggcagtacgagtatgtctagactattc 143  Q
    | |||||||||| | ||||||| |||||||||    
T  28035735 tcttaggcagtaggggtatgtccagactattc 28035766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 28035925 - 28035972
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  28035925 tagagtatcacatcctattgtgaacccccatgcggccattcctgacta 28035972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 31116835 - 31116777
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagatgatg 311  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||| ||| |||||    
T  31116835 tagagtatcacatcctattgtgaacccccctgcggccattcctgactacgcagctgatg 31116777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 25147344 - 25147466
Alignment:
Q  33 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 132  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || ||| |||||||||||| || ||||| |||||||||||| ||||||    
T  25147344 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacaggatggtctgtcacttgccagagcgggttcttaggcagtacgggtatgt 25147443  T
Q  133 ctagactattcccaggcctccta 155  Q
    | |||||||||||| | ||||||    
T  25147444 ccagactattcccatggctccta 25147466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 42705356 - 42705139
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| |||||||||||||||| | ||||||  |||||||||||| |||||   ||| || |||  ||||||||||| || ||||| ||||||||||    
T  42705356 acatcacgccctttcaggacatatgttggtactccggatggatcatgggcggcagcgacatgaaggtccgtcacttgccagagcgggttcttaggcagta 42705257  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 222  Q
    || | ||||| | |||||||||||| ||||||||||||||| || | || || |||  ||||| ||   ||||||| | |||||| ||||||||| ||||    
T  42705256 cgggcatgtccatactattcccagggctcctacagacattgagcttattgcgacagatgacgtggcccaggccttcacggagtttgctctacatgtcctc 42705157  T
Q  223 agccagcaggagaggggt 240  Q
    ||||| ||| ||||||||    
T  42705156 agccatcagcagaggggt 42705139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 39465347 - 39465486
Alignment:
Q  23 gacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagt 122  Q
    ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||||   ||| || |||  || |||||||| ||  |||| |||||||||    
T  39465347 gacatcacgccctttcaggacatatgctagtactccggatggatcatggccggcagcgacaggatggtccgtaacttgccagagccggttcttaggcagt 39465446  T
Q  123 acgagtatgtctagactattcccaggcctcctacagacattg 164  Q
    | | |||||||  |||||||| |||| || ||||||||||||    
T  39465447 atgggtatgtc--gactattctcagggcttctacagacattg 39465486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 3681088 - 3681143
Alignment:
Q  245 tagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  3681088 tagttttttagagtatcacatcctattatgaacccccctgcgaccattcctgacta 3681143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 25147612 - 25147659
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  25147612 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 25147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 32305637 - 32305590
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| |||||| ||||| | |||||||||||||    
T  32305637 tagagtatcacatcctattgtgaacccccatgtggccattcctgacta 32305590  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 39465623 - 39465670
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  39465623 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 39465670  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 32307986 - 32307880
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| ||||| |||||||||||| ||||||  ||||||||||||||| ||   ||| || |||  ||||||||||  || ||||| ||||||||||    
T  32307986 acatcacgccctttgaggacatatgctggtactccggatggatcatggccgacagcgacaggatggtccgtcacttgcctgagcgggttcttaggcagta 32307887  T
Q  124 cgagtat 130  Q
    || ||||    
T  32307886 cgggtat 32307880  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 3680825 - 3680918
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattag 117  Q
    |||| ||| ||||| |||||| || |||||||||  ||||||||||||||||||   |||||| |||  ||||||||||| || ||||| ||||    
T  3680825 acatcacgccctttgaggacacatactagtactccggatggatcatggccggcagcgacaagatggtccgtcacttgccagagcgggttcttag 3680918  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 32305811 - 32305774
Alignment:
Q  127 gtatgtctagactattcccaggcctcctacagacattg 164  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  32305811 gtatgtccagactattcccagggctcctacagacattg 32305774  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 42705079 - 42705035
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctga 297  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||    
T  42705079 tagagtatcacatcctattgtgaacccccctgcggccattcctga 42705035  T

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Target: scaffold0251 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 17192 - 16977
Alignment:
Q  33 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 132  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||   ||| || |||  ||||||| ||| || ||||| ||||| |||||| ||||||    
T  17192 cctttcaggacatatgctggtactctggatggatcatggccagcagcgacaggatggtccgtcactttccagagcgggttgttaggtagtacgggtatgt 17093  T
Q  133 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtag-cta--tggccttcgcagagttt-ctctacatgccctcagccag 228  Q
    | |||||||||| ||| ||||||||||||||  || | || ||||||  ||| | | |||  || ||||| |||||||| ||||||||| |||||||||     
T  17092 ccagactattccgagggctcctacagacatttagcttattgcggcagatgacatggcctaggtgcccttcacagagtttgctctacatgtcctcagccat 16993  T
Q  229 caggagaggggtgatc 244  Q
    ||| ||||||||||||    
T  16992 cagtagaggggtgatc 16977  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 16922 - 16875
Alignment:
Q  253 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 300  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  16922 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 16875  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 7042 - 7188
Alignment:
Q  33 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 132  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||   |||  | |||  ||||||||||| || || || |||||||||||  ||||||    
T  7042 cctttcaggacataagctagtactccagatggatcatggccgacagcgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgt 7141  T
Q  133 ctagactattcccaggcctcctacagacattgggcctcttacggcag 179  Q
    | |||||||||||  ||||||||||||||||| || |||| ||||||    
T  7142 ccagactattcccttgcctcctacagacattgagcttcttgcggcag 7188  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 6285954 - 6285814
Alignment:
Q  24 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 123  Q
    |||| ||| ||||| |||||||||||| |||||| ||||||||||||||  |||   | | || |||  |||||||| || || ||||| ||||||||||    
T  6285954 acatcacgccctttgaggacatatgctggtactccagatggatcatggctagcagcgataggatggtccgtcacttggcagagcgggttcttaggcagta 6285855  T
Q  124 cgagtatgtctagactattcccaggcctcctacagacattg 164  Q
    || ||||||| |||||||||||||| |||||| ||||||||    
T  6285854 cgggtatgtccagactattcccagggctcctatagacattg 6285814  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 35014337 - 35014454
Alignment:
Q  60 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 159  Q
    |||||||||||| ||||||  ||| || |||  ||||||||||| || ||||| |||||||||||| ||||||| ||||||||| |||| ||| |||| |    
T  35014337 gatggatcatggtcggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcacagggctcgtacata 35014436  T
Q  160 cattgggcctcttacggc 177  Q
    ||||| || | |||||||    
T  35014437 cattgagcttattacggc 35014454  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 2029728 - 2029818
Alignment:
Q  35 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacg 125  Q
    ||||||||| | |||| ||| ||| |||||||||||||||||||| | |||| |||  ||||||||||| || ||||| | ||||||||||    
T  2029728 tttcaggacgtgtgctggtattctggatggatcatggccggcaaacagaagatggtgcgtcacttgccagagcgggttctgaggcagtacg 2029818  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 257416 - 257345
Alignment:
Q  93 gtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 164  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||    
T  257416 gtcacttgccagagcgggttcttaggtagtacgggtatgtccagactattctcagggctcccacagacattg 257345  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 32451 - 32353
Alignment:
Q  35 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 133  Q
    |||||||||||||||| |||||| |||||||||||||||  || | ||| || |||  ||||||||||| || ||||| ||||| |||||  |||||||    
T  32451 tttcaggacatatgctggtactccagatggatcatggccaacagagacatgatggtccgtcacttgccagagcgggttcttaggtagtacaggtatgtc 32353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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