View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_23 (Length: 330)

Name: NF0648_low_23
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_23
NF0648_low_23
[»] chr4 (30 HSPs)
chr4 (14-330)||(312452-312767)
chr4 (14-330)||(6552276-6552593)
chr4 (127-330)||(38932620-38932823)
chr4 (141-330)||(26499278-26499467)
chr4 (183-330)||(47097342-47097489)
chr4 (234-330)||(6552897-6552993)
chr4 (196-330)||(48827963-48828097)
chr4 (142-330)||(51150940-51151127)
chr4 (126-327)||(56095123-56095323)
chr4 (141-292)||(35255419-35255570)
chr4 (159-298)||(45615619-45615758)
chr4 (128-319)||(32933951-32934135)
chr4 (196-298)||(7616903-7617005)
chr4 (258-330)||(11839868-11839940)
chr4 (142-330)||(13834427-13834614)
chr4 (254-319)||(38080866-38080931)
chr4 (258-311)||(48973337-48973390)
chr4 (258-329)||(39331100-39331171)
chr4 (167-330)||(8755812-8755970)
chr4 (252-330)||(31903351-31903429)
chr4 (262-330)||(17381488-17381556)
chr4 (258-305)||(8170895-8170942)
chr4 (134-201)||(48827872-48827939)
chr4 (141-251)||(1758463-1758572)
chr4 (144-186)||(12922168-12922210)
chr4 (260-298)||(36409656-36409694)
chr4 (260-298)||(36423822-36423860)
chr4 (260-305)||(971968-972013)
chr4 (141-186)||(52700756-52700801)
chr4 (266-330)||(4161825-4161889)
[»] scaffold0211 (1 HSPs)
scaffold0211 (14-330)||(20084-20402)
[»] chr5 (21 HSPs)
chr5 (16-330)||(9023107-9023424)
chr5 (126-319)||(27769881-27770074)
chr5 (150-276)||(28903780-28903906)
chr5 (150-276)||(28940175-28940301)
chr5 (250-327)||(11497952-11498029)
chr5 (140-249)||(16127048-16127157)
chr5 (258-311)||(26675123-26675175)
chr5 (258-311)||(26946731-26946783)
chr5 (262-298)||(37853360-37853396)
chr5 (258-305)||(14460086-14460133)
chr5 (233-327)||(11505291-11505385)
chr5 (233-327)||(11512685-11512779)
chr5 (233-327)||(11520061-11520155)
chr5 (233-327)||(11527469-11527563)
chr5 (262-311)||(8206231-8206280)
chr5 (1-46)||(25545767-25545812)
chr5 (258-311)||(27001235-27001288)
chr5 (141-242)||(42420534-42420635)
chr5 (258-330)||(7313984-7314056)
chr5 (141-245)||(9607101-9607205)
chr5 (251-319)||(11534893-11534961)
[»] chr3 (13 HSPs)
chr3 (16-330)||(50239632-50239943)
chr3 (126-330)||(7672320-7672521)
chr3 (168-293)||(43838465-43838589)
chr3 (258-329)||(30843640-30843711)
chr3 (262-309)||(3941666-3941713)
chr3 (258-330)||(46008625-46008697)
chr3 (258-329)||(23195656-23195727)
chr3 (262-311)||(26499839-26499888)
chr3 (257-306)||(37852904-37852953)
chr3 (271-311)||(12832220-12832260)
chr3 (259-311)||(14194858-14194910)
chr3 (258-330)||(14984506-14984578)
chr3 (258-330)||(34979110-34979182)
[»] chr8 (12 HSPs)
chr8 (14-330)||(36754667-36754981)
chr8 (14-115)||(41528704-41528805)
chr8 (141-330)||(33590091-33590280)
chr8 (161-330)||(1249113-1249283)
chr8 (14-58)||(16221618-16221662)
chr8 (220-330)||(41303046-41303157)
chr8 (271-330)||(21602123-21602182)
chr8 (253-311)||(21600521-21600579)
chr8 (124-247)||(4586732-4586855)
chr8 (262-317)||(33508620-33508675)
chr8 (252-298)||(42659935-42659981)
chr8 (258-311)||(24018018-24018071)
[»] scaffold0114 (1 HSPs)
scaffold0114 (16-330)||(34791-35097)
[»] scaffold0284 (1 HSPs)
scaffold0284 (14-330)||(2467-2769)
[»] chr1 (20 HSPs)
chr1 (126-330)||(49880032-49880235)
chr1 (211-330)||(45919850-45919969)
chr1 (126-330)||(40872645-40872846)
chr1 (59-177)||(45919965-45920084)
chr1 (145-330)||(9890620-9890801)
chr1 (141-330)||(27463724-27463913)
chr1 (183-298)||(31738321-31738435)
chr1 (150-276)||(16658227-16658353)
chr1 (126-215)||(47921789-47921879)
chr1 (59-115)||(49879921-49879977)
chr1 (196-319)||(52361954-52362077)
chr1 (196-298)||(8069009-8069110)
chr1 (16-58)||(49878363-49878405)
chr1 (16-52)||(45920385-45920421)
chr1 (258-317)||(6541117-6541176)
chr1 (258-298)||(34826996-34827036)
chr1 (142-217)||(36144785-36144860)
chr1 (265-305)||(33747858-33747898)
chr1 (259-311)||(38267346-38267398)
chr1 (141-217)||(38267442-38267518)
[»] chr2 (11 HSPs)
chr2 (150-330)||(31967468-31967648)
chr2 (126-330)||(41746426-41746630)
chr2 (146-330)||(7165664-7165848)
chr2 (260-330)||(40124364-40124434)
chr2 (150-247)||(9471794-9471891)
chr2 (196-328)||(17742516-17742647)
chr2 (148-243)||(3019946-3020041)
chr2 (258-311)||(8940071-8940124)
chr2 (79-115)||(41746690-41746727)
chr2 (258-298)||(12676513-12676553)
chr2 (262-330)||(15301525-15301593)
[»] chr6 (13 HSPs)
chr6 (157-319)||(21237172-21237334)
chr6 (141-330)||(6524843-6525026)
chr6 (145-330)||(26293372-26293557)
chr6 (142-330)||(25084903-25085091)
chr6 (252-329)||(9307392-9307469)
chr6 (258-330)||(16431591-16431663)
chr6 (140-215)||(9307228-9307303)
chr6 (16-58)||(14211349-14211391)
chr6 (258-327)||(31142019-31142088)
chr6 (126-186)||(21237108-21237168)
chr6 (258-301)||(29927657-29927700)
chr6 (262-330)||(10067659-10067727)
chr6 (266-330)||(21021035-21021099)
[»] chr7 (20 HSPs)
chr7 (76-330)||(8062791-8063039)
chr7 (223-319)||(5197982-5198078)
chr7 (147-319)||(25688960-25689130)
chr7 (203-329)||(18942839-18942965)
chr7 (196-330)||(27080855-27080989)
chr7 (196-330)||(27197312-27197446)
chr7 (142-311)||(30839838-30840007)
chr7 (141-330)||(38838565-38838753)
chr7 (141-298)||(1247496-1247652)
chr7 (196-330)||(8929505-8929639)
chr7 (141-215)||(18942736-18942810)
chr7 (262-330)||(5362344-5362412)
chr7 (14-58)||(7944905-7944949)
chr7 (258-330)||(40355004-40355076)
chr7 (68-115)||(7945246-7945293)
chr7 (258-311)||(1344462-1344515)
chr7 (262-314)||(3116911-3116963)
chr7 (262-298)||(32996369-32996405)
chr7 (142-217)||(39129265-39129340)
chr7 (78-107)||(3045245-3045274)
[»] scaffold0252 (1 HSPs)
scaffold0252 (144-330)||(17189-17373)
[»] scaffold0008 (5 HSPs)
scaffold0008 (137-212)||(80260-80335)
scaffold0008 (137-212)||(80753-80828)
scaffold0008 (137-212)||(81246-81321)
scaffold0008 (137-212)||(81739-81814)
scaffold0008 (137-212)||(82232-82307)
[»] scaffold0045 (1 HSPs)
scaffold0045 (274-311)||(20654-20691)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 312452 - 312767
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccc 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  312452 agatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatgaggggtggatctatgttagg-ctatgtggggctaaagccccacatgcccttccc 312550  T
Q  114 tannnnnnnatgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaa 213  Q
    ||       ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  312551 tatttttttatgtatattataaaaatggtaatagttattttgatccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattataaaa 312650  T
Q  214 taatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttga 313  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  312651 taatacatgattttgtactttattagtcataataatccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttga 312750  T
Q  314 atgttatggactatttt 330  Q
    |||||| ||||||||||    
T  312751 atgttagggactatttt 312767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 6552276 - 6552593
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccc 113  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| || ||| | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6552276 agatattgtgtcaagtgtttgtaaaaatttcactttgtatgaaa-catgggcggatctatgttagggctttgtggggctaaagccccacatgcccttccc 6552374  T
Q  114 tannnnnnn--atgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaa 211  Q
    ||         || |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6552375 tatttttttttatatatattataaaaattgtaatagttattttggtccgtgaatatgtaataaataatcataataatctctcagtgtattaaaattctaa 6552474  T
Q  212 aataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||| |||||||||||| ||||||||||||||||  || ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  6552475 aataatccatgattttgtactttgttagtcataataggccttgaagtgacaataaataagtatattgaaggactaatgtgacaatatcaatgaagtattt 6552574  T
Q  312 gaatgttatggactatttt 330  Q
    |||||||| ||||||||||    
T  6552575 gaatgttagggactatttt 6552593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 127 - 330
Target Start/End: Original strand, 38932620 - 38932823
Alignment:
Q  127 atattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattt 226  Q
    ||||||||||||  |||||||| |||| ||| | ||||| |||||||||||||||||||| | | ||| |||||||||||| ||||||| | ||||||||    
T  38932620 atattataaaaagggtaatagtcatttcggttcgtgaatgtgtaataaatagtcataatagtgtttcaatgtattaaaattttaaaatagtccatgattt 38932719  T
Q  227 tgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggacta 326  Q
    ||||  ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||  |||||    
T  38932720 tgtacattgttagtcataatagtctctgaagtgacaataaataagtatattgaaggactaatatgacaatattaatgaaatattttaatgttagagacta 38932819  T
Q  327 tttt 330  Q
    ||||    
T  38932820 tttt 38932823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 26499278 - 26499467
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||||| |||||||| ||||||| ||||| || |||||| |||||||||| | ||||||||||||||||||||||| |||||||| || |||||||||    
T  26499278 gtaatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaataataaatgattttatactttgttagt 26499377  T
Q  241 cataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    || ||||   | |||| ||| ||| | || |||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  26499378 caaaatagctcatgaaatgataattagtaagtatattgaatgactaatatgacaatattaatgaagtattttaatgttacggactatttt 26499467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 330
Target Start/End: Original strand, 47097342 - 47097489
Alignment:
Q  183 aataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaagg 282  Q
    |||| ||||||| |||||||||||| ||||||||| |||||||||||| ||||| |||||||  | || || || |||||||||||| ||||||| ||||    
T  47097342 aatagtctctcaatgtattaaaattttaaaataattcatgattttgtactttgtaagtcatagcagtctctaaactgacaataaataagtatattaaagg 47097441  T
Q  283 actaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||||||||||||||| ||| |||||||| | |||||  |||||||||    
T  47097442 actaatatgacaatattaataaagtattttagtgttaaagactatttt 47097489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 6552897 - 6552993
Alignment:
Q  234 tgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||||||||||  || ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||  |||||||||    
T  6552897 tgttagtcataataggccttgaagtgacaataaataagtatattgaaggactaatgagacaatatcaatgaagtatttgaatgttagagactatttt 6552993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 48827963 - 48828097
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    |||||| ||||| ||||||| | | |||||||||| ||| |||||| ||||| |||||||||||||||||| || ||||||||||||  |||||||||||    
T  48827963 tgtatttaaattttaaaatagtccctgattttgtactttattagtcgtaatagtccctgaagtgacaataagtaagtatattgaagggttaatatgacaa 48828062  T
Q  296 tatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||| ||||| ||||||  || ||| ||||||||||    
T  48828063 tattaatgacgtatttttatattagggactatttt 48828097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 330
Target Start/End: Complemental strand, 51151127 - 51150940
Alignment:
Q  142 taatagttattttggtccctgaatatgtaataaatagtcataataa-tctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||||||||||||||| ||||| |||||  | |||||| ||||| ||||||| |||||||||||| ||||||| |   |||||||  | | |||| ||    
T  51151127 taatagttattttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagtctctgattttc-actctgttggt 51151029  T
Q  241 cataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    || |||| ||||| |||||||||||| || ||||||||||| |||||||||||||||| ||  || ||||| ||||||| ||||||||||    
T  51151028 caaaatagtccct-aagtgacaataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactatttt 51150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 126 - 327
Target Start/End: Complemental strand, 56095323 - 56095123
Alignment:
Q  126 tatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatt 225  Q
    ||||||||||| |  |||||| |||||||||||||| ||| |||||  | |||||| |||| | ||||| |||||||||||| ||||||  |   |||||    
T  56095323 tatattataaatagggtaataattattttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaattgtctctgatt 56095224  T
Q  226 ttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggact 325  Q
    ||| | ||||||||||| ||||  |  |||||||||||||| || ||||||| || ||||||||||||||||| ||  || ||||| ||||||| |||||    
T  56095223 ttgcactttgttagtcaaaataggct-tgaagtgacaataagtaagtatattaaaagactaatatgacaatattaacaaattattttaatgttagggact 56095125  T
Q  326 at 327  Q
    ||    
T  56095124 at 56095123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 292
Target Start/End: Complemental strand, 35255570 - 35255419
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    ||||||||||||||||||||| |||||||||  | |||||| |||| ||||||| |||||||||||| ||||||| ||  |||||||| | ||| |||||    
T  35255570 gtaatagttattttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtatctgattttgcactttattagt 35255471  T
Q  241 cataataatccctgaagtgacaataaat-atgtatattgaaggactaatatga 292  Q
    || ||| |   ||||||||||||||| | | ||||||| || |||||||||||    
T  35255470 caaaat-aggtctgaagtgacaataagtaaagtatattaaaagactaatatga 35255419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 45615619 - 45615758
Alignment:
Q  159 cctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagt 258  Q
    ||||||| |||||| |||||||| || | ||| ||| |||||||||||| ||||||| |   |||||||| | ||| ||||||| |||| |   ||||||    
T  45615619 cctgaatgtgtaattaatagtcacaacagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagtttttgaagt 45615718  T
Q  259 gacaataaatatgtatattgaaggactaatatgacaatat 298  Q
    |||||||| || ||||||||||||||||| ||||||||||    
T  45615719 gacaataagtaagtatattgaaggactaaaatgacaatat 45615758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 32933951 - 32934135
Alignment:
Q  128 tattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatttt 227  Q
    ||||||||  ||||||||| ||||||||||| |||||| |||||| | |||||||||| |||||||| | |||||||||| ||||||      |||||||    
T  32933951 tattataattatagtaataattattttggtctctgaatgtgtaatgagtagtcataat-atctctcaatatattaaaattttaaaat-----ttgatttt 32934044  T
Q  228 gtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    | | ||| ||||||| ||| | || ||||||||||| || || ||||||| || ||||||| ||||||||| ||  || ||||| |||||||    
T  32934045 gcactttattagtcaaaat-agccttgaagtgacaacaagtaagtatattaaaagactaatgtgacaatattaacaaattattttaatgtta 32934135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 7617005 - 7616903
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    |||||||||||| ||||||| |   |||||||| | ||||||||||| |||| ||| | || |||||||||||| |||||||||| ||||||||||| ||    
T  7617005 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacaataaataagtatattgaatgactaatatgataa 7616906  T
Q  296 tat 298  Q
    |||    
T  7616905 tat 7616903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 11839940 - 11839868
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||||| || || ||||||||||||||||||||||||| || ||||||||| ||||| | ||||||||||    
T  11839940 tgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgtcaaggactatttt 11839868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 330
Target Start/End: Complemental strand, 13834614 - 13834427
Alignment:
Q  142 taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtc 241  Q
    |||||||||||| ||||| ||||| |||||| | |||||| || | ||| | | |||||||||||| ||||||| |   |||||||  | ||  ||||||    
T  13834614 taatagttatttaggtcc-tgaatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagtctctgattttacacttcattagtc 13834516  T
Q  242 ataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    | |||| |   | |||||||||||| || |||||||||||||||||||||||||||| ||  || ||||| |||||||  |||||||||    
T  13834515 aaaatagtttttaaagtgacaataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactatttt 13834427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 38080866 - 38080931
Alignment:
Q  254 gaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||| ||  |||||||| |||||||    
T  38080866 gaagtgacaataaataagtatattgaagtactaatatgactatattaacaaagtattttaatgtta 38080931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 48973337 - 48973390
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||| ||||    
T  48973337 tgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcattt 48973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 39331100 - 39331171
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 329  Q
    |||||||||||| |||||||||| |||| |||| ||||||| ||||||| |||| ||| | |||||||||||    
T  39331100 tgacaataaataagtatattgaaagactgatataacaatattaatgaagcattttaatatcatggactattt 39331171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 8755812 - 8755970
Alignment:
Q  167 tgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataa 266  Q
    ||||| ||||||| | |||| ||||||| | ||||||| || ||||||| |   |||||||| ||||||||||||| |||| |   |||| ||| |||||    
T  8755812 tgtaacaaatagttaaaatagtctctcaatttattaaattt-taaaatagtttttgattttgcattttgttagtcaaaatagtatttgaaatgataataa 8755910  T
Q  267 atatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
        ||||||| ||||| |||||||||||||| || ||||||||| |||||||  |||||||||    
T  8755911 ----gtatattaaaggattaatatgacaatattaacgaagtattttaatgttagagactatttt 8755970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 31903429 - 31903351
Alignment:
Q  252 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||| ||||||||| || ||||||||||||||| |||||||||||  |||||| ||||| || || |||||| |||||    
T  31903429 ctgaaatgacaataagtaagtatattgaaggactgatatgacaatactaatgaattattttaacgtcatggacaatttt 31903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 17381488 - 17381556
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||| || |||||||||||||||||||||||||||| || ||| ||||| ||| | | ||||||||||    
T  17381488 aataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatatcaaggactatttt 17381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 8170895 - 8170942
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaa 305  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||||||    
T  8170895 tgacaataagtaagtatattgaagtactaatatgacaatattaatgaa 8170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 48827872 - 48827939
Alignment:
Q  134 aaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtatt 201  Q
    ||||| |||||||| |||||| |||| | ||| |||||||||||||||||||  ||||||| ||||||    
T  48827872 aaaaaaagtaatagctattttagtccttaaatgtgtaataaatagtcataattgtctctcaatgtatt 48827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 1758572 - 1758463
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    ||||||||||||| ||||| ||||| | |||||| || ||| |||| ||||||| |||||||||||| ||| ||| |   |||||||  ||||| |||||    
T  1758572 gtaatagttattt-ggtccttgaatgtttaataagtaatcacaatagtctctcaatgtattaaaattttaagatagtttctgatttttcattttattagt 1758474  T
Q  241 cataataatcc 251  Q
    || ||||||||    
T  1758473 caaaataatcc 1758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 12922168 - 12922210
Alignment:
Q  144 atagttattttggtccctgaatatgtaataaatagtcataata 186  Q
    |||||||||||||||||||||| |||||||| |||||| ||||    
T  12922168 atagttattttggtccctgaatgtgtaataagtagtcacaata 12922210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 36409656 - 36409694
Alignment:
Q  260 acaataaatatgtatattgaaggactaatatgacaatat 298  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  36409656 acaataagtaagtatattgaaggactaatatgacaatat 36409694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 36423822 - 36423860
Alignment:
Q  260 acaataaatatgtatattgaaggactaatatgacaatat 298  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  36423822 acaataagtaagtatattgaaggactaatatgacaatat 36423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 972013 - 971968
Alignment:
Q  260 acaataaatatgtatattgaaggactaatatgacaatatcaatgaa 305  Q
    ||||||| ||||||||||||| || |||||||||||||| ||||||    
T  972013 acaataagtatgtatattgaatgattaatatgacaatattaatgaa 971968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 52700756 - 52700801
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataata 186  Q
    |||||||| ||||| |||||||||||||||| || |||||||||||    
T  52700756 gtaatagtcattttagtccctgaatatgtaagaagtagtcataata 52700801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 4161825 - 4161889
Alignment:
Q  266 aatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||| ||||||||||| |||||||||||||||| ||||||  |||| ||| | || |||||||||    
T  4161825 aataagtatattgaagaactaatatgacaatattaatgaaacattttaatatcatagactatttt 4161889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 20402 - 20084
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccc 113  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20402 agatattgtgtcaagtgttagtaaaaatttcactttatatgaaatcaggggcggatctatgttagggctatgtggggctcaagccccacatgcccttccc 20303  T
Q  114 tannnnnnn-atgtatattataaaaatagtaatagtt-attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaa 211  Q
    ||        || ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  20302 tattttttttatatatattagaaaaatggtaatagtttatttttgtccctgaatatgtaataaatagtcataatattatctcagtgtattaaaattctaa 20203  T
Q  212 aataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20202 aataatccatgattttgtactttgttagtcataatagtccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 20103  T
Q  312 gaatgttatggactatttt 330  Q
    ||||||||  |||||||||    
T  20102 gaatgttagagactatttt 20084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 9023107 - 9023424
Alignment:
Q  16 atattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttcccta 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||||||    
T  9023107 atattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcaggggcggatctatgttagggctatgtggggctttagccccacatgcccttcccta 9023206  T
Q  116 nnnnnnn---atgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 212  Q
              || ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||    
T  9023207 ttttttttatatatatattatataaatggtaatagttattttggtccctgaatatgtattaaatagtcataataatctcacagtgtattacacttctaaa 9023306  T
Q  213 ataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttg 312  Q
    ||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9023307 ataatccatgattttgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttg 9023406  T
Q  313 aatgttatggactatttt 330  Q
    ||||||| ||||||||||    
T  9023407 aatgttagggactatttt 9023424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 319
Target Start/End: Complemental strand, 27770074 - 27769881
Alignment:
Q  126 tatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatt 225  Q
    ||||||||||||| | |||||||  ||||| ||||| ||| |||||||||||||||||||| ||| ||| |||||||||||||||||||| | |||||||    
T  27770074 tatattataaaaagactaatagtccttttgatccctaaatgtgtaataaatagtcataatagtctttcaatgtattaaaattctaaaatagtccatgatt 27769975  T
Q  226 ttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    ||||| ||| |||||||||||| ||  |||||||| ||||| || |||||||||||   |||||||||||||| ||| || ||||| |||||||    
T  27769974 ttgtacttttttagtcataatagtctttgaagtgaaaataagtaagtatattgaagagttaatatgacaatattaataaaatattttaatgtta 27769881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 28903906 - 28903780
Alignment:
Q  150 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataat 249  Q
    |||||||||| ||| | ||||||||||| | |||||| ||||| | |||||||||||||||||||| | | |||||||||| |||||||||||||||| |    
T  28903906 attttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagt 28903807  T
Q  250 ccctgaagtgacaataaatatgtatat 276  Q
     | |||||||| ||||| || ||||||    
T  28903806 tcatgaagtgataataagtaagtatat 28903780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 28940301 - 28940175
Alignment:
Q  150 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataat 249  Q
    |||||||||| ||| | ||||||||||| | |||||| ||||| | |||||||||||||||||||| | | |||||||||| |||||||||||||||| |    
T  28940301 attttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagt 28940202  T
Q  250 ccctgaagtgacaataaatatgtatat 276  Q
     | |||||||| ||||| || ||||||    
T  28940201 tcatgaagtgataataagtaagtatat 28940175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 11497952 - 11498029
Alignment:
Q  250 ccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 327  Q
    ||||||||||||||||| || ||||||| || || |||||||||||||| ||  || ||||| ||||||| |||||||    
T  11497952 ccctgaagtgacaataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgttagggactat 11498029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 16127048 - 16127157
Alignment:
Q  140 agtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttag 239  Q
    ||||||||| |||||||||||| ||| |||||  | |||||| |||| |||||||  |||| ||||||  |||||| | | ||||| |||| ||||||||    
T  16127048 agtaatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagtccttgattgtgtagtttgttag 16127147  T
Q  240 tcataataat 249  Q
    ||| ||||||    
T  16127148 tcaaaataat 16127157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 26675175 - 26675123
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||| |||||    
T  26675175 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26675123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 26946783 - 26946731
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||| |||||    
T  26946783 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26946731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 37853396 - 37853360
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatat 298  Q
    |||||||||||||||||||||||||||| ||||||||    
T  37853396 aataaatatgtatattgaaggactaatacgacaatat 37853360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 14460086 - 14460133
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaa 305  Q
    ||||||||| ||  ||||||||||||||||||||||||||||| ||||    
T  14460086 tgacaataagtaaatatattgaaggactaatatgacaatatcagtgaa 14460133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 11505291 - 11505385
Alignment:
Q  233 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 327  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11505291 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11505385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 11512685 - 11512779
Alignment:
Q  233 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 327  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11512685 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11512779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 11520061 - 11520155
Alignment:
Q  233 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 327  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11520061 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11520155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 11527469 - 11527563
Alignment:
Q  233 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 327  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11527469 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 8206231 - 8206280
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||| || ||||||||||||| |||||||||||||| |||||| |||||    
T  8206231 aataagtaagtatattgaaggattaatatgacaatattaatgaattattt 8206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25545812 - 25545767
Alignment:
Q  1 tgtggaggagcagagatattgtgtcaagtgttagtaaaaatttcac 46  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||||    
T  25545812 tgtgggggagcacaaatattgtgtcaagtgtgagtaaaaatttcac 25545767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 27001288 - 27001235
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||||||| || ||||||||| ||  |||||||||||||| ||||||||||||    
T  27001288 tgacaataagtaagtatattgacggggtaatatgacaatattaatgaagtattt 27001235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 42420635 - 42420534
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||||||||||||||| |||||| |||||   ||||||| |||  ||| | | ||||| |||||| ||||||| | | ||||| |||| |||||||||    
T  42420635 gtaatagttattttggtctctgaatgtgtaacgtatagtcacaattgtctttaaatgtatcaaaattttaaaatagttcgtgattatgtactttgttagt 42420536  T
Q  241 ca 242  Q
    ||    
T  42420535 ca 42420534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 7314056 - 7313984
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||||||||||| ||||||| | |||| ||||||||||||| || ||| ||||| ||| | | ||||||||||    
T  7314056 tgacaataaataagtatattaagggaccaatatgacaatattaacgaaatatttaaatatgagggactatttt 7313984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 9607101 - 9607205
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    ||||| ||| ||||| || ||||||||| || ||||| |||||||||||  ||| ||||| |||||| ||||||| |   |||||||| | | |||||||    
T  9607101 gtaattgttgttttgatctctgaatatggaaaaaatactcataataatccatcaatgtatcaaaattttaaaatagtctctgattttgcaatgtgttagt 9607200  T
Q  241 cataa 245  Q
    |||||    
T  9607201 cataa 9607205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 11534893 - 11534961
Alignment:
Q  251 cctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    |||||||||||||||| || ||||||| || || |||||||||||||| ||  || ||||| |||||||    
T  11534893 cctgaagtgacaataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgtta 11534961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 50239632 - 50239943
Alignment:
Q  16 atattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttcccta 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||    
T  50239632 atattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcagcggtggatatatgttagggctatgtgaggctaaagccccacatgcccttcccta 50239731  T
Q  116 nnnnnnnatgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 215  Q
           || ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50239732 tttttctatatatatgataaaaatggtaatagttattttggtcc-tgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 50239830  T
Q  216 atacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaat 315  Q
    || |||| || |||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  50239831 atccatgtttatgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaattaagtatttgaat 50239930  T
Q  316 gttatggactatttt 330  Q
    ||  |||||||||||    
T  50239931 gt--tggactatttt 50239943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 126 - 330
Target Start/End: Original strand, 7672320 - 7672521
Alignment:
Q  126 tatattataaaaatag-taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgat 224  Q
    |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||| |||||||||| | | |||||||||||||||||||||| ||||||    
T  7672320 tatattataaaaatagataatagtcattttggtccttgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaataattcatgat 7672419  T
Q  225 tttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggac 324  Q
    |||||| |||||||||||||||| | | |||||||||||||| || |||||||||||  |||| ||||| ||||  ||||||||||| |||||||  |||    
T  7672420 tttgtactttgttagtcataatagt-catgaagtgacaataagta-gtatattgaagagctaa-atgac-atattgatgaagtattttaatgttagagac 7672515  T
Q  325 tatttt 330  Q
    ||||||    
T  7672516 tatttt 7672521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 43838465 - 43838589
Alignment:
Q  168 gtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaa 267  Q
    |||||||||||||||| || | ||||| |||||||||||| ||||||| |   |||||||||| |||||||||||||||| ||| ||||||||||||||     
T  43838465 gtaataaatagtcata-tagtatctcaatgtattaaaattttaaaatagtctttgattttgtactttgttagtcataatagtccatgaagtgacaataag 43838563  T
Q  268 tatgtatattgaaggactaatatgac 293  Q
    || |||||||||||| ||||||||||    
T  43838564 taagtatattgaagggctaatatgac 43838589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 30843711 - 30843640
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 329  Q
    |||||||||||| |||||||||| ||||||||||||||||| ||||||| |||| ||  | |||||||||||    
T  30843711 tgacaataaataagtatattgaaagactaatatgacaatattaatgaagcattttaacatcatggactattt 30843640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 3941713 - 3941666
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtat 309  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||    
T  3941713 aataagtaggtatattgaaggactaatatgacaatattaatgaagtat 3941666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 46008697 - 46008625
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||||||||||| ||||||| || || |||||||||||||| || ||| ||||| |||||||  |||||||||    
T  46008697 tgacaataaataagtatattaaaagattaatatgacaatattaacgaattattttaatgttaaagactatttt 46008625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 23195656 - 23195727
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 329  Q
    ||||||||| || |||||||||| ||||||||||||||||| || ||| || || ||||| || ||||||||    
T  23195656 tgacaataattaagtatattgaaagactaatatgacaatattaacgaaatactttaatgtcatagactattt 23195727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 26499888 - 26499839
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||||| |||||||||| |||| |||||| ||||| ||||||||||||    
T  26499888 aataaataagtatattgaatgactgatatgaaaatattaatgaagtattt 26499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 37852953 - 37852904
Alignment:
Q  257 gtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaag 306  Q
    ||||||||||||| ||||||| || ||||||||||||| ||| |||||||    
T  37852953 gtgacaataaataagtatattaaaagactaatatgacattattaatgaag 37852904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 12832220 - 12832260
Alignment:
Q  271 gtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||||||||||||| |||||||||||| ||||||| ||||    
T  12832220 gtatattgaaggacttatatgacaatattaatgaagcattt 12832260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 14194858 - 14194910
Alignment:
Q  259 gacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||||| || ||||||| || |||| |||||||||||| ||||||||||||    
T  14194858 gacaataactaagtatattaaatgactgatatgacaatattaatgaagtattt 14194910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 14984578 - 14984506
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||||||||  | ||||||||||||| |||||||||||||| || ||| ||||| ||||| | | ||||||||    
T  14984578 tgacaataagcaagtatattgaaggattaatatgacaatattaacgaaatattttaatgtcaggaactatttt 14984506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 34979110 - 34979182
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||||| || |||||||||| ||||||||||| ||||| || ||| ||||| ||||| |  |||||||||    
T  34979110 tgacaataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactatttt 34979182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 36754981 - 36754667
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccc 113  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||| ||  | |||||||||||| ||||||||||||||||||||||||||| ||| |    
T  36754981 agatatcgtgtcaagtgttagtaaaaattttactttgtatgaaatcaaggacggatctatgttaggactatgtggggctaaagccccacatgcctttcac 36754882  T
Q  114 tannnnnnnatgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaa 213  Q
    ||       ||  ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  36754881 tatttttttat--atattataaaaatggtaatagttattttggtccctgaacatgtaataaataatcataataatctctcagtgtattaaaattctaaaa 36754784  T
Q  214 taatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttga 313  Q
    |||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36754783 taattcatgattttgtactttgttagtcataatagtccatgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttga 36754684  T
Q  314 atgttatggactatttt 330  Q
    |||||| |||| |||||    
T  36754683 atgttagggaccatttt 36754667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 41528805 - 41528704
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccc 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||  || | |||||||||||| ||||||||||||||||||| |||||||||||||    
T  41528805 agatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcaatggcggatctatgttaggactatgtggggctaaagccctacatgcccttccc 41528706  T
Q  114 ta 115  Q
    ||    
T  41528705 ta 41528704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 33590091 - 33590280
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||||| ||||| ||  ||||||||| || ||||| ||| |||| ||||||| |||||||||||| ||||||| | |||||||||| | |||||||||    
T  33590091 gtaatagtcattttagtatctgaatatgcaacaaataatcacaatagtctctcaatgtattaaaattgtaaaatagttcatgattttgcactttgttagt 33590190  T
Q  241 cataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||  ||| ||  | |||||||||||| ||  |||||||||| |   |||||||||||| || ||||||||| ||||||| ||| ||||||    
T  33590191 caatatagtcttttaagtgacaataattaattatattgaagaatcgatatgacaatattaacgaagtattttaatgttagggattatttt 33590280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 330
Target Start/End: Original strand, 1249113 - 1249283
Alignment:
Q  161 tgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctg-aagtg 259  Q
    |||||||||||  |||| |||||||| ||||| | | |||||||||||||||||| | ||||||||||   ||||||||||| |||| ||| || |||||    
T  1249113 tgaatatgtaacgaataatcataatagtctcttaatctattaaaattctaaaatagttcatgattttgctctttgttagtcaaaatagtccttgaaagtg 1249212  T
Q  260 acaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||| ||  |||||||||| ||| |||||||| ||| ||  || ||||| |||||||| || ||||||    
T  1249213 acaataagtaaatatattgaagtactgatatgacagtattaacaaaatattttaatgttatagattatttt 1249283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 16221662 - 16221618
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaat 58  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  16221662 agatattgtgtcaagtgttagtaaaaatttcactttgtatgaaat 16221618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 41303046 - 41303157
Alignment:
Q  220 atgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    ||||||||| | ||||||||||| ||||  ||||| ||||||||||| || ||||||| || ||||||||||||||||| ||  || ||||| |||||||    
T  41303046 atgattttgcactttgttagtcaaaatag-ccctggagtgacaataattaagtatattaaaagactaatatgacaatattaacaaattattttaatgtta 41303144  T
Q  320 t--ggactatttt 330  Q
    |  ||||||||||    
T  41303145 tcgggactatttt 41303157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 21602123 - 21602182
Alignment:
Q  271 gtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||||||||||||||||||||||||||| || ||| ||||| ||||| | ||||||||||    
T  21602123 gtatattgaaggactaatatgacaatattaacgaattattttaatgtcagggactatttt 21602182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 21600579 - 21600521
Alignment:
Q  253 tgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||| ||||||||| || |||||||||||||| ||||||||||||| |||||| |||||    
T  21600579 tgaaatgacaataagtaagtatattgaaggacaaatatgacaatattaatgaaatattt 21600521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 4586732 - 4586855
Alignment:
Q  124 tgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatga 223  Q
    ||||||||||||  |  ||||||||||||||| ||| ||||| |||||  | |||| | |||| ||||| | |||||||||||| ||||||| |  ||||    
T  4586732 tgtatattataattagggtaatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtctatga 4586831  T
Q  224 ttttgtattttgttagtcataata 247  Q
    ||||| | || |||||||| ||||    
T  4586832 ttttgcacttcgttagtcaaaata 4586855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 33508620 - 33508675
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgt 317  Q
    ||||| || ||||||||||||||||||| || ||||| |||||||||||| |||||    
T  33508620 aataagtaagtatattgaaggactaatacgataatattaatgaagtattttaatgt 33508675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 42659981 - 42659935
Alignment:
Q  252 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatat 298  Q
    |||| |||||||||| || |||||||||| |||||||||||||||||    
T  42659981 ctgatgtgacaataagtaagtatattgaatgactaatatgacaatat 42659935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 24018071 - 24018018
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||||| | ||||||||||||| ||||||||||||||||| || ||| |||||    
T  24018071 tgacaattagtatgtatattgaatgactaatatgacaatattaacgaaatattt 24018018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 34791 - 35097
Alignment:
Q  16 atattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttcccta 115  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||          ||||||||||||||    
T  34791 atattgtgtcaagtgttagtaaaagtttcactttgtatgaaatcaggggcggatctatgttagggctatgtggggc----------catgcccttcccta 34880  T
Q  116 nnnnnnn--atgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaa 213  Q
             || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34881 tttttttttatatatattataaaaatggtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaa 34980  T
Q  214 taatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttga 313  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34981 taatccatgattttgtactttgttagtcataatagtccctgaagtgataataaataagtatattgaaggactaatatgacaatatcaatgaagtatttga 35080  T
Q  314 atgttatggactatttt 330  Q
    |||||| ||||||||||    
T  35081 atgttagggactatttt 35097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 2769 - 2467
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaatcaggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccc 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||           || |||||||||||||| |||||||||    
T  2769 agatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcaggggcggatctatgt-----------ggagctaaagccccacacgcccttccc 2681  T
Q  114 tannnnnnnatgtatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaa 213  Q
    ||       || |||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2680 tattat---atatatattataaaaatggtagtagttattttggtctctgaatatgtaataaatattcataataatctctcagtgtattaaaattctaaaa 2584  T
Q  214 taatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttga 313  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2583 taatccatgattttgtactttgttagtcataataatccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttga 2484  T
Q  314 atgttatggactatttt 330  Q
    |||||| ||||||||||    
T  2483 atgttagggactatttt 2467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 126 - 330
Target Start/End: Original strand, 49880032 - 49880235
Alignment:
Q  126 tatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatt 225  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  49880032 tatattataaaaatcgtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaa-ttctaaaataatccatgatt 49880130  T
Q  226 ttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggact 325  Q
    ||||| |||||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  49880131 ttgtactttgttagtcataatagtccctgaagtgacaataagtaagtatattgaaagactaatatgacaatatcaatgaagtattttaatgttagggact 49880230  T
Q  326 atttt 330  Q
    |||||    
T  49880231 atttt 49880235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 45919969 - 45919850
Alignment:
Q  211 aaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatt 310  Q
    ||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||| || ||||||||||||   |||||||||||||||||||||||||    
T  45919969 aaataattcatgattttgtactttgttagtcataatagtccctaaagtgacaataagtaagtatattgaagggtcaatatgacaatatcaatgaagtatt 45919870  T
Q  311 tgaatgttatggactatttt 330  Q
    | ||||||| ||| ||||||    
T  45919869 ttaatgttagggattatttt 45919850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 330
Target Start/End: Complemental strand, 40872846 - 40872645
Alignment:
Q  126 tatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatt 225  Q
    |||||||||||||  ||||||    ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||||||| ||| ||| | | |||||    
T  40872846 tatattataaaaaaggtaataaccgttttggtccctgaacgtgtaataaatagtcataatagtctttcaatgtattaaaattttaatatagtccctgatt 40872747  T
Q  226 ttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggact 325  Q
    ||||| ||||||||||   ||| ||| |||||||||||||| || |||||||  ||| ||||||||||||||| ||| |||||||| ||||| | | |||    
T  40872746 ttgtactttgttagtc---atagtccttgaagtgacaataagtaagtatattatagggctaatatgacaatattaattaagtattttaatgtaacgaact 40872650  T
Q  326 atttt 330  Q
    |||||    
T  40872649 atttt 40872645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 45920084 - 45919965
Alignment:
Q  59 caggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttccctannnnnnn-atgtatattataaaaatagtaatagttattttggt 157  Q
    |||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||        || |||||||||||||| |||||||||||||||||    
T  45920084 caggggcggatctatgttagagctatgtggggctaaatccccacatgcccttccctattttttttatatatattataaaaatggtaatagttattttggt 45919985  T
Q  158 ccctgaatatgtaataaata 177  Q
    ||||||||||||||||||||    
T  45919984 ccctgaatatgtaataaata 45919965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 330
Target Start/End: Complemental strand, 9890801 - 9890620
Alignment:
Q  145 tagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcata 244  Q
    |||| |||||||| ||||||| || ||  | || ||| |||| ||||||| ||||||||||||||||||||   |||||||||| | ||||||||||| |    
T  9890801 tagtcattttggttcctgaatgtggaacgattaatcacaatagtctctcaatgtattaaaattctaaaatagatcatgattttgcactttgttagtcaaa 9890702  T
Q  245 ataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||| ||||| || |||||||||    |||||||||||||||||||||||||||| || ||||||||  ||||||| ||| ||||||    
T  9890701 atagtcccttaaatgacaataa----gtatattgaaggactaatatgacaatattaacgaagtattctaatgttaaggattatttt 9890620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 27463724 - 27463913
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||| |||||||||||  || || |||||||| |||||| | || ||||||| |||||||||||||||||||| |   | |||||| | |||||||||    
T  27463724 gtaataattattttggtcattggatgtgtaataagtagtcacattattctctcaatgtattaaaattctaaaatagtctctaattttgcactttgttagt 27463823  T
Q  241 cataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    || |||| ||  |||| ||||||||| || |||||||||| ||||||||| ||||||| ||  |||||||| || |||| | ||||||||    
T  27463824 caaaatagtctttgaaatgacaataagtaagtatattgaaagactaatataacaatattaacaaagtattttaacgttaggaactatttt 27463913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 31738435 - 31738321
Alignment:
Q  183 aataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaagg 282  Q
    |||||||||||| ||||||| |||| |||||||||   |||||||||| ||||||||||| |||| | ||||||||||||||||||| ||||||| || |    
T  31738435 aataatctctcaatgtattagaattttaaaataatttttgattttgtactttgttagtcaaaatagt-cctgaagtgacaataaataagtatattaaatg 31738337  T
Q  283 actaatatgacaatat 298  Q
    | ||||||||||||||    
T  31738336 attaatatgacaatat 31738321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 16658353 - 16658227
Alignment:
Q  150 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataat 249  Q
    |||||||||| ||| | ||||||||||| | |||||| ||||| | |||||||||||||||||||| | | |||||||||| |||||||||||||||| |    
T  16658353 attttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagt 16658254  T
Q  250 ccctgaagtgacaataaatatgtatat 276  Q
     | |||||||| ||||| || ||||||    
T  16658253 tcatgaagtgataataagtaagtatat 16658227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 47921789 - 47921879
Alignment:
Q  126 tatattataaaaatag-taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 215  Q
    |||||||||||||  | |||||| |||||| |||||| ||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  47921789 tatattataaaaaatgataatagctattttagtccctaaatgtgtaataaatagtcataatagtctcttagtgtatcaaaattctaaaata 47921879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 49879921 - 49879977
Alignment:
Q  59 caggggtgaatctatgttagggctatgtggggctaaagccccacatgcccttcccta 115  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49879921 caggggcggatctatgttagggctatgtggggctaaagccccacatgctcttcccta 49879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 52361954 - 52362077
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    |||||||||||| ||||||| |   |||||||| | ||| ||| ||| |||||||  |||||||| |||||||| |||||| |||| |||||||||| ||    
T  52361954 tgtattaaaattttaaaatagtctctgattttgcactttattattcaaaataatcaatgaagtgataataaataagtatatcgaagaactaatatgataa 52362053  T
Q  296 tatcaatgaagtatttgaatgtta 319  Q
    ||| ||  |||||||| |||||||    
T  52362054 tattaacaaagtattttaatgtta 52362077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 8069009 - 8069110
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||| || | | ||| || ||| ||||| || ||||||||| ||| |||||||||||    
T  8069009 tgtattaaaattctaaaatagttcatgattttgcactttgttagtca-aaaagttccttaaatgataataagtaagtatattgatggattaatatgacaa 8069107  T
Q  296 tat 298  Q
    |||    
T  8069108 tat 8069110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 49878363 - 49878405
Alignment:
Q  16 atattgtgtcaagtgttagtaaaaatttcactttgtataaaat 58  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  49878363 atattgtgtcaagtgttagtaaaaatttcactttgtatgaaat 49878405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 45920421 - 45920385
Alignment:
Q  16 atattgtgtcaagtgttagtaaaaatttcactttgta 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  45920421 atattgtgtcaagtgttagtaaaaatttcactttgta 45920385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 6541176 - 6541117
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgt 317  Q
    ||||||||| || |||||||||||||||||||||||||||| || ||| ||||| |||||    
T  6541176 tgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatgt 6541117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 34826996 - 34827036
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatat 298  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  34826996 tgacaataaataagtatattgaatgactaatatgacaatat 34827036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 36144785 - 36144860
Alignment:
Q  142 taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataat 217  Q
    ||||||| |||||||||| |||||||||||| | || ||| |||| |||| || ||||| ||||||| ||||||||    
T  36144785 taatagtcattttggtccttgaatatgtaatgagtaatcacaatactctcccaatgtatcaaaattccaaaataat 36144860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 33747858 - 33747898
Alignment:
Q  265 aaatatgtatattgaaggactaatatgacaatatcaatgaa 305  Q
    ||||| ||||||||||||| |||||||||||||| ||||||    
T  33747858 aaataagtatattgaaggattaatatgacaatattaatgaa 33747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 38267346 - 38267398
Alignment:
Q  259 gacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||||| ||  |||||||||||| |||||||||||||| ||||||| ||||    
T  38267346 gacaataagtaaatatattgaaggattaatatgacaatattaatgaagcattt 38267398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 38267518 - 38267442
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataat 217  Q
    |||||||| |||||||||||| |||||||| ||| | |||| |||| || |||| ||||| ||||||  ||||||||    
T  38267518 gtaatagtcattttggtccctcaatatgtagtaagtggtcacaatagtccctcaatgtataaaaatttcaaaataat 38267442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 150 - 330
Target Start/End: Complemental strand, 31967648 - 31967468
Alignment:
Q  150 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |    
T  31967648 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaagaatccatgattttgtactttgttagtcataatagt 31967549  T
Q  250 ccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    | ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31967548 ctctgaagtgacagtaaaaaagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactatttt 31967468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 126 - 330
Target Start/End: Complemental strand, 41746630 - 41746426
Alignment:
Q  126 tatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatt 225  Q
    |||||||||||||  ||||||| |||||||||| ||| || ||||| |||||||||||||| ||||||| |||||| ||||||||||||| | |||||||    
T  41746630 tatattataaaaaaggtaatagctattttggtctctggatgtgtaagaaatagtcataatagtctctcaatgtatttaaattctaaaatagttcatgatt 41746531  T
Q  226 ttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggact 325  Q
    ||||| ||| |||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |||||||  ||||    
T  41746530 ttgtacttttttagacataatagtccctgaagtgacaataaataagtatattgaagggctaatatgacaatattaatgaagtattttaatgttagagact 41746431  T
Q  326 atttt 330  Q
    |||||    
T  41746430 atttt 41746426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 330
Target Start/End: Complemental strand, 7165848 - 7165664
Alignment:
Q  146 agttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataa 245  Q
    |||||||||| ||||| ||| |||||  | |||||| |||| ||| ||| |||||||||||| ||||||| |   |||||||| | ||| ||||| | ||    
T  7165848 agttattttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagttaaaa 7165749  T
Q  246 taatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    || ||  |||||||||||||| || |||||||||| ||||||||||| ||||| ||  || ||||| ||||||| ||||||||||    
T  7165748 tagtctttgaagtgacaataagtaagtatattgaaagactaatatgaaaatattaacaaattattttaatgttaaggactatttt 7165664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 40124434 - 40124364
Alignment:
Q  260 acaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||| || |||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  40124434 acaataagtaagtatattgaagggctaatatgacaatattaatgaagtactttaatgttatggactatttt 40124364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 9471891 - 9471794
Alignment:
Q  150 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataata 247  Q
    ||||||||| |||||| |||||||||||||||||||| | | | | |||||||||||||||||||| |   || ||||||| ||||||||||||||||    
T  9471891 attttggtctctgaatgtgtaataaatagtcataatagttttttaatgtattaaaattctaaaatagtcattgtttttgtactttgttagtcataata 9471794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 17742516 - 17742647
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    |||||||||||| ||||||| |   |||||||| | ||||||||| | ||||  ||||||||||||||||| || ||||||| || ||||||||||||||    
T  17742516 tgtattaaaattttaaaatagtctctgattttgcactttgttagttaaaatag-ccctgaagtgacaataagtaagtatattaaaagactaatatgacaa 17742614  T
Q  296 tatcaatgaagtatttgaatgttatggactatt 328  Q
    ||| ||  || ||||| ||||||| | ||||||    
T  17742615 tattaacaaattatttaaatgttaggcactatt 17742647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 3019946 - 3020041
Alignment:
Q  148 ttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcat 243  Q
    |||||||||||| ||||| | |||  |||||| |||||||||| ||| | |||| ||||| ||||||| |   ||||||||||||| |||||||||    
T  3019946 ttattttggtccttgaatgtataaagaatagttataataatctttcaatatattgaaattataaaatagtctttgattttgtatttcgttagtcat 3020041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 8940071 - 8940124
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    |||||| || ||||||||||||| ||||||||||||||||| ||| || |||||    
T  8940071 tgacaacaagtatgtatattgaatgactaatatgacaatattaattaaatattt 8940124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 41746727 - 41746690
Alignment:
Q  79 ggctatgtggggctaaagccccacatgcc-cttcccta 115  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  41746727 ggctatgtggggctaaagccccacatgccacttcccta 41746690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 12676553 - 12676513
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatat 298  Q
    |||||||| ||| ||||||||| ||||||||||||||||||    
T  12676553 tgacaatagataagtatattgagggactaatatgacaatat 12676513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 15301525 - 15301593
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||| || ||||||||||| ||||||| |||||||| || ||||||||| ||||| |  |||||||||    
T  15301525 aataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatgtcagagactatttt 15301593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 157 - 319
Target Start/End: Original strand, 21237172 - 21237334
Alignment:
Q  157 tccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaa 256  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| | | ||| |||||| ||| |||||||||||| |||||| |    
T  21237172 tccctgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtccctgagtttgtactttattagtcataatagtccctgga 21237271  T
Q  257 gtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    |||||||||| || |||||||||| | ||||||||||||| | |||||||||||| |||||||    
T  21237272 gtgacaataactaagtatattgaacggctaatatgacaatgttaatgaagtattttaatgtta 21237334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 6524843 - 6525026
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||||  |||||||||| ||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| | | |||||||||| |||||| ||    
T  6524843 gtaatagccattttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtccctgattttgtactttgtttgt 6524942  T
Q  241 cataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
      || |    | | |||||| ||||| ||  ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  6524943 --tagt----cataaagtgagaataagtaaatatattgaaggactaatatgacaatattaatgaagtattttaatgttacggactatttt 6525026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 330
Target Start/End: Original strand, 26293372 - 26293557
Alignment:
Q  145 tagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcata 244  Q
    ||||||||||||||||| ||| ||||| || ||  || |||||||| | | | |||||||||||||||||| | |||||||||||| ||||||||||| |    
T  26293372 tagttattttggtccctaaatgtgtaacaagtaaccacaataatcttttaatatattaaaattctaaaatagtccatgattttgtactttgttagtcaaa 26293471  T
Q  245 ataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||     | |||||||||||| ||||||||||||| ||||||||||| ||||| ||  |||||||| ||||||| ||||||||||    
T  26293472 atagcatttaaagtgacaataagtatgtatattgaatgactaatatgataatattaacaaagtattttaatgttaaggactatttt 26293557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 330
Target Start/End: Original strand, 25084903 - 25085091
Alignment:
Q  142 taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtc 241  Q
    |||||||||||||||||| || || | |||  | |||| |||||| ||||| | |||||||||||| | ||||| |   | |||||| ||||| ||| ||    
T  25084903 taatagttattttggtccttggatgtataacgagtagttataatagtctcttaatgtattaaaatttttaaatagtctttaattttgcattttattaatc 25085002  T
Q  242 ataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    | |||||||  |||||||| ||||| || |||||||||| || |||||||||||||| ||  || ||||| |||||||  |||||||||    
T  25085003 aaaataatctttgaagtgaaaataagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaaagactatttt 25085091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 9307392 - 9307469
Alignment:
Q  252 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 329  Q
    ||||| ||| ||||| || |||||||||||||||||||||||||| | |||||| ||||| ||||| | |||||||||    
T  9307392 ctgaaatgaaaataagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggactattt 9307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 16431591 - 16431663
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||||| || |||||||||| ||||||||||||||||| | |||| ||||| |||||||  |||||||||    
T  16431591 tgacaataagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgttagagactatttt 16431663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 9307228 - 9307303
Alignment:
Q  140 agtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 215  Q
    |||||| ||||||||| || |||||| ||||||||||||| |||||| ||||| | ||||| |||||| |||||||    
T  9307228 agtaatggttattttgatctctgaatgtgtaataaatagtgataatagtctctaaatgtatcaaaattttaaaata 9307303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 14211391 - 14211349
Alignment:
Q  16 atattgtgtcaagtgttagtaaaaatttcactttgtataaaat 58  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  14211391 atattatgtcaagtgttagtaaaaatttcactttgtatgaaat 14211349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 31142088 - 31142019
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 327  Q
    ||||||||| ||  |||||||||| ||| |||||||||||| |||||||||||| ||| | |||||||||    
T  31142088 tgacaataagtaaatatattgaagtactgatatgacaatattaatgaagtattttaatatcatggactat 31142019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 21237108 - 21237168
Alignment:
Q  126 tatattataaaaatagtaatagttattttggtccctgaatatgtaataaatagtcataata 186  Q
    |||||||||||||   ||||||| |||||| ||| |||||||||||||| |||||||||||    
T  21237108 tatattataaaaaagataatagtcattttgatccttgaatatgtaataagtagtcataata 21237168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 29927657 - 29927700
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaa 301  Q
    |||||||||||| || |||||||| |||||||||||||||||||    
T  29927657 tgacaataaataagtttattgaagaactaatatgacaatatcaa 29927700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 10067659 - 10067727
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||| || |||||||||| ||||||||||||||||| ||  |||||||| ||||| |  |||||||||    
T  10067659 aataagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactatttt 10067727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 21021035 - 21021099
Alignment:
Q  266 aatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||| |||||||||||||||||||||| ||||  || ||| ||||| |||||||  |||||||||    
T  21021035 aataagtatattgaaggactaatatgataataataacgaaatattttaatgttaatgactatttt 21021099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 76 - 330
Target Start/End: Complemental strand, 8063039 - 8062791
Alignment:
Q  76 tagggctatgtggggctaaagccccacatgc-ccttccctannnnnnnatgtatattataaaaatagtaatagttattttggtccctgaatatgtaataa 174  Q
    ||||||||||||||||||||||||||||| |  ||||||||        | | ||| ||||| || ||||||||||||||||||| ||||| |||||  |    
T  8063039 tagggctatgtggggctaaagccccacatccaacttccctatttt----tttttatcataaatatggtaatagttattttggtccttgaatgtgtaacga 8062944  T
Q  175 atagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtat 274  Q
     |||||| |||| ||| ||| |||||||||||| ||||||| ||  |||||||| | ||  ||||||| ||||| || |||||||||||| | || ||||    
T  8062943 gtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctgattttgcactt--ttagtcaaaataa-ccttgaagtgacaatgagtaagtat 8062847  T
Q  275 attgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||| || ||||||||||||||||| ||  || ||||| ||||||||||||||||||    
T  8062846 attaaaagactaatatgacaatattaacaaattattttaatgttatggactatttt 8062791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 5197982 - 5198078
Alignment:
Q  223 attttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    |||||| | ||||||||||| |||| |||||||||  |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  5197982 attttgcactttgttagtcaaaatagtccctgaagcaacaataaataagtatattgaaagactaatatgacaatattaatgaagtattttaatgtta 5198078  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 25688960 - 25689130
Alignment:
Q  147 gttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataat 246  Q
    ||||||||| | | ||||| |||||| |||| ||| |||| ||||||| ||||||||||||||||||||||   |||||||| | ||||||||| | |||    
T  25688960 gttattttgattcttgaatgtgtaatgaataatcacaatagtctctcaatgtattaaaattctaaaataatttctgattttgcactttgttagttaaaat 25689059  T
Q  247 aatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 319  Q
    | ||||| || ||| ||||| || ||||||| || |  |||||||||||||| || ||||||||  |||||||    
T  25689060 agtcccttaaatgataataagtaagtatatttaatg--taatatgacaatattaacgaagtattctaatgtta 25689130  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 18942965 - 18942839
Alignment:
Q  203 aaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaat 302  Q
    ||||||||||||| |   |||||||| ||||| ||| ||| |||||||| |||| ||||||||| || |||||||||| || |||||||||||||| ||     
T  18942965 aaattctaaaatagtctctgattttgcattttattaatcaaaataatccatgaaatgacaataagtaagtatattgaatgattaatatgacaatattaac 18942866  T
Q  303 gaagtatttgaatgttatggactattt 329  Q
    || |||||| |||||||  ||||||||    
T  18942865 gacgtattttaatgttagagactattt 18942839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 330
Target Start/End: Complemental strand, 27080989 - 27080855
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    ||||||||||||||||||||     |||||||  | ||||||| ||| |||| ||| |||||||| ||||| || ||||  ||||||| |||||||| ||    
T  27080989 tgtattaaaattctaaaatagactttgatttttcactttgttattcaaaatagtccttgaagtgataataagtaagtatgctgaaggattaatatgataa 27080890  T
Q  296 tatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||| || ||||||||| ||||||||||||||||||    
T  27080889 tattaaagaagtattttaatgttatggactatttt 27080855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 27197312 - 27197446
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    ||||||||||||||||||||     |||||||  | ||||||| ||| |||| ||| |||||||| ||||| || ||||  ||||||| |||||||| ||    
T  27197312 tgtattaaaattctaaaatagactttgatttttcactttgttattcaaaatagtccttgaagtgataataagtaagtatgctgaaggattaatatgataa 27197411  T
Q  296 tatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||| || ||||||||| ||||||||||||||||||    
T  27197412 tattaaagaagtattttaatgttatggactatttt 27197446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 30840007 - 30839838
Alignment:
Q  142 taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtc 241  Q
    ||||||| |||||||||||||||| | |||  |||||| | |||| ||||||| |||| || || | ||||||| | | |||||||  ||||| |||||     
T  30840007 taatagtcattttggtccctgaatgtataacgaatagttacaatagtctctcaatgtaatataaatttaaaatagtccctgattttaaattttattagtt 30839908  T
Q  242 ataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    | |||| || || || ||| |||||||| ||||| |||||||||||||||||||| | || |||||||||    
T  30839907 aaaatagtctctaaaatgataataaataagtatactgaaggactaatatgacaatgttaacgaagtattt 30839838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 330
Target Start/End: Complemental strand, 38838753 - 38838565
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagt 240  Q
    |||||| |||||||||||||||||| |||||  | |||||| |||| ||| ||| |||||||||||| ||||||| |   |||||||| |||||||||||    
T  38838753 gtaataattattttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttgttagt 38838654  T
Q  241 cataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    || ||| | |||||||| |||||    || ||||||| || |||||| |||| ||||| ||  || ||||| ||| ||| ||||||||||    
T  38838653 caaaat-agccctgaagagacaactggtaagtatattaaaagactaacatgataatattaacaaattattttaatattagggactatttt 38838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 298
Target Start/End: Original strand, 1247496 - 1247652
Alignment:
Q  141 gtaatagttatttt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttag 239  Q
    |||||||||||||| |||||||||||||||||  | |||||| |||| | ||| | |||||||||||| ||||||| | | ||||||||   |||| ||     
T  1247496 gtaatagttatttttggtccctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagt-cttgattttgcgctttgctaa 1247594  T
Q  240 tcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatat 298  Q
    ||| ||| | ||||||||||||||  | |||||||||| || |||||||||||||||||    
T  1247595 tcaaaat-agccctgaagtgacaactagtatgtatattaaaagactaatatgacaatat 1247652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 8929505 - 8929639
Alignment:
Q  196 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 295  Q
    |||||||||||| ||||||| |   |||||||| | ||||||||||| |||| ||| | || ||||| |||||| ||||| |||| ||||||| ||| ||    
T  8929505 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacagtaaataagtatactgaatgactaatttgataa 8929604  T
Q  296 tatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||| || ||||||||  ||||||| ||| ||||||    
T  8929605 tattaacgaagtattctaatgttaaggattatttt 8929639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 18942736 - 18942810
Alignment:
Q  141 gtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 215  Q
    |||||||| |||||||||||||||| |||||  ||||||||||||| || |||| ||||| |||||| |||||||    
T  18942736 gtaatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaata 18942810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 5362412 - 5362344
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||||||| ||||||||||||||||||||||| |||| || ||||||||| ||| | | ||||||||||    
T  5362412 aataaataagtatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactatttt 5362344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 7944905 - 7944949
Alignment:
Q  14 agatattgtgtcaagtgttagtaaaaatttcactttgtataaaat 58  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||    
T  7944905 agatattgtgtcaagtgttggtaaaaatttcactttgtatgaaat 7944949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 40355004 - 40355076
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    ||||||||| ||||||||| |||| |||||||||||||||| |||||||| ||| ||||| |  |||||||||    
T  40355004 tgacaataagtatgtatatagaagaactaatatgacaatattaatgaagtgttttaatgtaaatgactatttt 40355076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 7945246 - 7945293
Alignment:
Q  68 atctatgttagggctatgtggggctaaagccccacatgcccttcccta 115  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||    
T  7945246 atctatgttagggctatgtggggctaaacccccgcatgtccttcccta 7945293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 1344515 - 1344462
Alignment:
Q  258 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||| |||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  1344515 tgacattaaataagtatattgaaggactgatgtgacaatattaatgaagtattt 1344462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 3116963 - 3116911
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaa 314  Q
    ||||| || |||||||||| ||||||||||||||||| |||||| ||||||||    
T  3116963 aataagtaagtatattgaaagactaatatgacaatattaatgaaatatttgaa 3116911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 32996405 - 32996369
Alignment:
Q  262 aataaatatgtatattgaaggactaatatgacaatat 298  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32996405 aataaataagtatattgaaggactaatatgacaatat 32996369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 39129340 - 39129265
Alignment:
Q  142 taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataat 217  Q
    ||||||| |||||||||||| |||||  ||||||||||||||||| | |   | ||||| ||||||||||||||||    
T  39129340 taatagtcattttggtccctcaatatacaataaatagtcataatagttttctaatgtatcaaaattctaaaataat 39129265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 3045274 - 3045245
Alignment:
Q  78 gggctatgtggggctaaagccccacatgcc 107  Q
    ||||||||||||||||||||||||||||||    
T  3045274 gggctatgtggggctaaagccccacatgcc 3045245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 330
Target Start/End: Complemental strand, 17373 - 17189
Alignment:
Q  144 atagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcat 243  Q
    ||||| |||||||||||||||| || || || ||||   |||| | ||||| ||||||||||||||||||||   | ||||||||||   |  ||||||     
T  17373 atagtcattttggtccctgaatgtgcaacaagtagtagcaatagtttctcaatgtattaaaattctaaaataggccctgattttgtaccat--tagtcaa 17276  T
Q  244 aataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 330  Q
    |||  |||||| |||||||||||||| ||||||||||  |||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  17275 aatggtccctgtagtgacaataaataagtatattgaaatactagtatgacaatattaacgaagtattttaatgttatggactatttt 17189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 80260 - 80335
Alignment:
Q  137 aatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 212  Q
    |||| |||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  80260 aatattaatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 80335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 80753 - 80828
Alignment:
Q  137 aatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 212  Q
    |||| |||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  80753 aatattaatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 80828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 81246 - 81321
Alignment:
Q  137 aatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 212  Q
    |||| |||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  81246 aatattaatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 81321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 81739 - 81814
Alignment:
Q  137 aatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 212  Q
    |||| |||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  81739 aatattaatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 81814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 82232 - 82307
Alignment:
Q  137 aatagtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 212  Q
    |||| |||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  82232 aatattaatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 82307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 20691 - 20654
Alignment:
Q  274 tattgaaggactaatatgacaatatcaatgaagtattt 311  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  20691 tattgaaggactaatatgacaatattaatgaaatattt 20654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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