View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_31 (Length: 310)
Name: NF0648_low_31
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 20010398 - 20010159
Alignment:
| Q |
5 |
taacatttaaattataattttaatagattcactccaagaaaagaaataggcttgaacatgagatgctacaaaa---ggtttttgtcaagtacaaccaaac |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||| |
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| T |
20010398 |
taacatttaaattataattttaatagattcactccaagaaaagaaataggcttgaacatgagatgttgcaaaaattggtttttgtcaagtataaccaaac |
20010299 |
T |
|
| Q |
102 |
tttgaaggaaaaccgtgaaagtgatgaatatattgatccggttctcatggatgatcctgaaattaatgctggtagtttatggttattgggagatgaagtt |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20010298 |
tttgaaggaaaaccgttaaagtgatgaatatattgatctggtgctcatggatgatcctgaaattaatgttggtagtttatggttattgggagatgaagtt |
20010199 |
T |
|
| Q |
202 |
cgtgttcgtgacggtcaaagtgatgttgtttttgatgatg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
20010198 |
agtgttcgtgacggtcaaagtgatgttgtttttgatgatg |
20010159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 24195460 - 24195699
Alignment:
| Q |
5 |
taacatttaaattataattttaatagattcactccaagaaaagaaataggcttgaacatgagatgctacaaaa---ggtttttgtcaagtacaaccaaac |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||||| |
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| T |
24195460 |
taacatttaaattataattttaatagattcactctaagaaaagaaataggcttgaacatgagatgttgcaaaaattgatttttgtcaagtacaaccaaac |
24195559 |
T |
|
| Q |
102 |
tttgaaggaaaaccgtgaaagtgatgaatatattgatccggttctcatggatgatcctgaaattaatgctggtagtttatggttattgggagatgaagtt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24195560 |
tttgaaggaaaaccgtgaaagtgatgaatatattgattcggtgctcatggatgatcctgaaattaatgctggtagtttatggttattgggagatgaagtt |
24195659 |
T |
|
| Q |
202 |
cgtgttcgtgacggtcaaagtgatgttgtttttgatgatg |
241 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||| |
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| T |
24195660 |
cgtgttcgtgacgatcaaattgatgttgtttttgatgatg |
24195699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 24193612 - 24193369
Alignment:
| Q |
1 |
aaactaacatttaaattataattttaatagattcactccaagaaaagaaataggcttgaacatgagatgctacaaaa---ggtttttgtcaagtacaacc |
97 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||| ||||||| |
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| T |
24193612 |
aaactaacgtttaaattataattttaatagattcactccaagaaaagaaataggcttgaacatgagatgttgcaaaaattgatttttgtcaaatacaacc |
24193513 |
T |
|
| Q |
98 |
aaactttgaaggaaaaccgtgaaagtgatgaatatattgatccggttctcatggatgatcctgaaattaatgctggtagtttatggttattgggagatga |
197 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24193512 |
aaactttgaaggaaaattgtgaaagtgatgaatatattgatccggtgctcatggattatcctgaaattaatgctggtagtttatggttattgggagatga |
24193413 |
T |
|
| Q |
198 |
agttcgtgttcgtgacggtcaaagtgatgttgtttttgatgatg |
241 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
24193412 |
agttcgtgttcgtgacgatcaaattgatgttgtttttgatgatg |
24193369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2948021 - 2948265
Alignment:
| Q |
1 |
aaactaacatttaaattataattt-taatagattcactccaagaaaagaaataggcttgaacatgagatgctacaaaa---ggtttttgtcaagtacaac |
96 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||| |
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| T |
2948021 |
aaactaacatttaacttctaatttgtaatagattcactccaagaaaagaaataggcttaaacatgagatgttgcaaaaattggtttttgttaagtacaac |
2948120 |
T |
|
| Q |
97 |
caaactttgaaggaaaaccgtgaaagtgatgaatatattgatccggttctcatggatgatcctgaaattaatgctggtagtttatggttattgggagatg |
196 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||| |
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| T |
2948121 |
caaactttgaaggaacaccgtgaaagtgatgaatatattgatccggtgatcatggatgatcctgaaattaatgttggtagagaatggttattgggcgatg |
2948220 |
T |
|
| Q |
197 |
aagttcgtgttcgtgacggtcaaagtgatgttgtttttgatgatg |
241 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
2948221 |
aagttcgtgttcgtgaaggtcaaagtgaggttgtttatgatgatg |
2948265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3070699 - 3070452
Alignment:
| Q |
1 |
aaactaacatttaaattataattt-taatagattcactccaagaaaagaaataggcttgaacatgagatgctacaaaa---ggtttttgtcaagtacaac |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||| |
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| T |
3070699 |
aaactaacatttaaattataatttgtaatagattccctccaagaaaagaaataggcttgaacaggagatgttgcaaaaattggtttttgtcaagtacaac |
3070600 |
T |
|
| Q |
97 |
caaactttgaaggaaaaccgtgaaagtgatgaatatattgatccggttctcatggatgatcctgaaattaatgctggtagttta----tggttattggga |
192 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
3070599 |
caaactttgaaggaaaaccgtgaaagtgattaatatattgatccggtgctcatggatgatcctgaaattaatgctggtagtgaatagttagttattggga |
3070500 |
T |
|
| Q |
193 |
gatgaagttcgtgttcgtgacggtcaaagtgatgttgtttttgatgat |
240 |
Q |
| |
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||||||||| ||||||| || |||||||||||||||||| ||||||| |
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|
| T |
3070499 |
gatgaagtttgtgttcgcgatggtcaaagtgatgttgttgatgatgat |
3070452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9445211 - 9444967
Alignment:
| Q |
1 |
aaactaacatttaaattataattt-taatagattcactccaagaaaagaaataggcttgaacatgagatgctacaaaa---ggtttttgtcaagtacaac |
96 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| |
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| T |
9445211 |
aaactaacaattaaattataatttgtaatagattcgctccaagaaaagaaataggcttgaacatgagatgttgaaaaaattgatttttgttaagtacaac |
9445112 |
T |
|
| Q |
97 |
caaactttgaaggaaaaccgtgaaagtgatgaatatattgatccggttctcatggatgatcctgaaattaatgctggtagtttatggttattgggagatg |
196 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| || ||||||||||||||| | |
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| T |
9445111 |
ctaactttgaaggaacaccgtgaaagtgatgaatatattgatccgctgctcatggatgatcctgaaattaatgttggtggtgaatggttattgggagacg |
9445012 |
T |
|
| Q |
197 |
aagttcgtgttcgtgacggtcaaagtgatgttgtttttgatgatg |
241 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||||||| |
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|
| T |
9445011 |
aagttcgtgtttgtgatggtcaaagtgatgttgtttatgatgatg |
9444967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17716909 - 17716978
Alignment:
| Q |
1 |
aaactaacatttaaattataattt-taatagattcactccaagaaaagaaataggcttgaacatgagatg |
69 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17716909 |
aaactaacatttaagttataatttgtaatagattcaatccaagaaaagaaataggcttgaacatgagatg |
17716978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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