View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_32 (Length: 310)
Name: NF0648_low_32
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_32 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 74 - 310
Target Start/End: Original strand, 39825447 - 39825683
Alignment:
| Q |
74 |
ttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagttccggcatt |
173 |
Q |
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| T |
39825447 |
ttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagttatggcatt |
39825546 |
T |
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| Q |
174 |
ggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttacttgtaaggatatatgttgtgtgcattcattcatactctcgtt |
273 |
Q |
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| T |
39825547 |
ggcatttatcatgtcaatctcaaaccggtacgcaatcctagtattggtaaattgttacatgtaaggatatatgttgtgtgcattcattcatactctcctt |
39825646 |
T |
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| Q |
274 |
attgtaaccagtcagccacatcttaaacgttcaatct |
310 |
Q |
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| T |
39825647 |
attgtaaccagtcagccacatcttaaacgttcaatct |
39825683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 39805416 - 39805574
Alignment:
| Q |
74 |
ttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagttccggcatt |
173 |
Q |
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| T |
39805416 |
ttgcaacctctatgatagaaaaccagatttccaaaatagttatggttggagtgttgctctagacggttctgactattctccactcaaaagttccggcatt |
39805515 |
T |
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| Q |
174 |
ggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttact |
232 |
Q |
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| T |
39805516 |
ggcatttatcacgtcaatctcaaaccagtacgcaattttagtattgttaaatttttact |
39805574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 39926991 - 39927131
Alignment:
| Q |
65 |
ccctagctgttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagt |
164 |
Q |
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|||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
39926991 |
ccctcgctcttgcaacctctatgacagaaaaccagatttcaaaaacagttatggttggagtgttgctctggacggttctgattattcaccacttaaaagt |
39927090 |
T |
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| Q |
165 |
tccggcattggcatttatcatgtcaatctcaaaccggtacg |
205 |
Q |
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| T |
39927091 |
tccggcgttggaatttatcacgtcaatctcaaaccggtacg |
39927131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 309
Target Start/End: Original strand, 39910384 - 39910624
Alignment:
| Q |
65 |
ccctagctgttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagt |
164 |
Q |
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|||| ||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
39910384 |
ccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgttgctctagacggttctgattattcaccacttaaaagt |
39910483 |
T |
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| Q |
165 |
tccggcattggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttacttgtaaggatatatgttgtgtgcattcattcat |
264 |
Q |
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| T |
39910484 |
tccggtgttggaatttatcacgtcaatctcaaaccggtacgctagcctattatatttatatgtttatttgttaggatctaggttgtgtg----tagttat |
39910579 |
T |
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| Q |
265 |
actctcgttattgtaaccagtcagccacatcttaaacgttcaatc |
309 |
Q |
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| T |
39910580 |
aatcccgttattgtaaccggtcagccagatcttaaacgttcaatc |
39910624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 39813926 - 39814066
Alignment:
| Q |
65 |
ccctagctgttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagt |
164 |
Q |
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|||| ||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
39813926 |
ccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgtttctctagacggttctgattattcaccacttaaaagt |
39814025 |
T |
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| Q |
165 |
tccggcattggcatttatcatgtcaatctcaaaccggtacg |
205 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||| |
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| T |
39814026 |
tccggcgttggaatttatcacgtcaatctcaaaccggtacg |
39814066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 39921703 - 39921843
Alignment:
| Q |
65 |
ccctagctgttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagt |
164 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
39921703 |
ccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgttgctctagatggttctgattattcaccacttaaaagt |
39921802 |
T |
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| Q |
165 |
tccggcattggcatttatcatgtcaatctcaaaccggtacg |
205 |
Q |
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| T |
39921803 |
tccggcgttggaatttatcacgtcaatctcaaaccggtacg |
39921843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 39902035 - 39902221
Alignment:
| Q |
65 |
ccctagctgttgcaacctctatgatagaaaaccagatttcaaaaatagttatggttggagtgttgctctagacggttctgattattctccactcaaaagt |
164 |
Q |
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|||| ||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
39902035 |
ccctcgctcttgcaacctctatgacagaaaaccagatttcaagaacagttatggttggagtgtttctctagacggttctgattattcaccacttaaaagt |
39902134 |
T |
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| Q |
165 |
tccggcattggcatttatcatgtcaatctcaaaccggtacgaaatcctagtattggtaaattgttacttgtaaggatatatgttgtg |
251 |
Q |
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|| |||||||| ||||| ||||||||||| ||||||||||| | |||| ||||| ||||| ||| ||| || |||||| |||||| |
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| T |
39902135 |
tctggcattggaatttaccatgtcaatcttaaaccggtacgctagcctattattgttaaatgtttatttgcaatgatataggttgtg |
39902221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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