View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_33 (Length: 307)
Name: NF0648_low_33
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 75 - 282
Target Start/End: Original strand, 48592071 - 48592278
Alignment:
| Q |
75 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
174 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592071 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48592170 |
T |
|
| Q |
175 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592171 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48592270 |
T |
|
| Q |
275 |
cctatgat |
282 |
Q |
| |
|
|||||||| |
|
|
| T |
48592271 |
cctatgat |
48592278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 75 - 282
Target Start/End: Original strand, 48601766 - 48601973
Alignment:
| Q |
75 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
174 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48601766 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48601865 |
T |
|
| Q |
175 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48601866 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48601965 |
T |
|
| Q |
275 |
cctatgat |
282 |
Q |
| |
|
|||||||| |
|
|
| T |
48601966 |
cctatgat |
48601973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 75 - 282
Target Start/End: Complemental strand, 23232261 - 23232054
Alignment:
| Q |
75 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
174 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| ||||| ||| ||||||| || | |||||| ||| | |||||||||||||||||||| ||| | |
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|
| T |
23232261 |
tggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttatatcccttcgacttggctctgctcga |
23232162 |
T |
|
| Q |
175 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
274 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23232161 |
tttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
23232062 |
T |
|
| Q |
275 |
cctatgat |
282 |
Q |
| |
|
|||||||| |
|
|
| T |
23232061 |
cctatgat |
23232054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 267
Target Start/End: Complemental strand, 23224924 - 23224736
Alignment:
| Q |
79 |
catcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaattta |
178 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||| ||||||| |||| |||||| || | ||||||||||||||||| || || ||||| |
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|
| T |
23224924 |
catcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatatggaccccttatatcccttcgacttggttctgttccattta |
23224825 |
T |
|
| Q |
179 |
tcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaac |
267 |
Q |
| |
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|| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||||| ||||||||||| ||| ||||||||| |
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| T |
23224824 |
tcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttattcttcccgtaaaatgaacattgccatcaac |
23224736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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