View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_37 (Length: 295)
Name: NF0648_low_37
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_37 |
 | |
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| [»] scaffold0695 (1 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
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| [»] scaffold0964 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0695 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 56 - 295
Target Start/End: Original strand, 4140 - 4380
Alignment:
| Q |
56 |
atgagatggacat-catcatcaacatcaaatggaggaggagaagtttggggaggagcttgaggcaatggaggaggatatggaagacggcgagtcgcagcg |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
4140 |
atgagatggacatgcatcatcaacatcaaatggaggaggagaagcttgaggaggagcttgagggaacggaggaggatatggaagacggcgagtcgtagcg |
4239 |
T |
|
| Q |
155 |
aaggtggagggggaagcgtcccatggtgccagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgtc |
254 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
4240 |
aaggcggagggggaagcgtcccgtggtgccagaccctgagcctcttgatgactatcccagtggcccacacgacactaccatgctatggaggtaccatgtc |
4339 |
T |
|
| Q |
255 |
acttggtcaggaaggcgtatgagggagaggtatttattaat |
295 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
4340 |
acttggtcaggaaggcgtctcagggagaggtatttattaat |
4380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 56 - 295
Target Start/End: Complemental strand, 14126489 - 14126249
Alignment:
| Q |
56 |
atgagatggacat-catcatcaacatcaaatggaggaggagaagtttggggaggagcttgaggcaatggaggaggatatggaagacggcgagtcgcagcg |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||| |||| |
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|
| T |
14126489 |
atgagatggacatgcatcatcaacatcaaatggaggaggagaagcttgaggaggagcttgagggaacggaggaggatatggaagacggcgagtcgtagcg |
14126390 |
T |
|
| Q |
155 |
aaggtggagggggaagcgtcccatggtgccagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgtc |
254 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
14126389 |
aaggcggagggggaagcgtcccgtggtgccagaccctgagcctcttgatgactatcccagtggcccacacgacactaccatgctatggaggtaccatgtc |
14126290 |
T |
|
| Q |
255 |
acttggtcaggaaggcgtatgagggagaggtatttattaat |
295 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
14126289 |
acttggtcaggaaggcgtctcagggagaggtatttattaat |
14126249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 56 - 295
Target Start/End: Complemental strand, 14091117 - 14090877
Alignment:
| Q |
56 |
atgagatggacat-catcatcaacatcaaatggaggaggagaagtttggggaggagcttgaggcaatggaggaggatatggaagacggcgagtcgcagcg |
154 |
Q |
| |
|
||||||||||| | |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14091117 |
atgagatggacgtgcatcattaaaatcaaatggaggaggagaagtttgaggaggagcttgaggcaatggaggaggatatggaagacggcgagtcgcagca |
14091018 |
T |
|
| Q |
155 |
aaggtggagggggaagcgtcccatggtgccagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgtc |
254 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||| ||||||||||||| |
|
|
| T |
14091017 |
aaggcggagggggaagcgtcccatggtgccagaccctgagcctcttgttgactatcccagtggcccacacgagactaccatattatggaggtaccatgtc |
14090918 |
T |
|
| Q |
255 |
acttggtcaggaaggcgtatgagggagaggtatttattaat |
295 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
14090917 |
acttgttcaggaaggcgtctgagggagaggtatttattaat |
14090877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 40306988 - 40306923
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccat |
251 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| ||||| | |||| | |||||||||| |
|
|
| T |
40306988 |
gaccctgagccacttgatgactatcccggtggcccacacgacactggcctgctgtggaggtaccat |
40306923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 5339277 - 5339383
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagagg |
284 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||| | ||| | |||| | || ||||||||| ||| ||| |||||||||| ||| || |||| |
|
|
| T |
5339277 |
gaccctgagccactagatgactatcccggtggcccacacgagactgacgtgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgagg |
5339376 |
T |
|
| Q |
285 |
tatttat |
291 |
Q |
| |
|
||||||| |
|
|
| T |
5339377 |
tatttat |
5339383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 36831376 - 36831486
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagagg |
284 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||||||||| | |||| | |||| | || ||||||||| ||| ||| |||||||||| ||| || |||| |
|
|
| T |
36831376 |
gaccctgagccactggatgattatccaggtggcccacacgagactagcctgctgtggaagtaccatgtgcacgtggccaggaaggcgactgatggcgagg |
36831475 |
T |
|
| Q |
285 |
tatttattaat |
295 |
Q |
| |
|
||||||||||| |
|
|
| T |
36831476 |
tatttattaat |
36831486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 20216998 - 20216825
Alignment:
| Q |
123 |
gaggaggatatggaagacggcgagtcgcagcgaaggtggagggggaagcgtcccatggtgccagaccctgagcctcttgatgactatcccagtggcccac |
222 |
Q |
| |
|
|||||||||||| ||||| ||||| | || |||||| ||| |||||||||| |||||||||| ||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
20216998 |
gaggaggatatgaaagacagcgagccacaacgaaggaggatggggaagcgtatggtggtgccagatcctgatccttttgatgactatcccggtggcccac |
20216899 |
T |
|
| Q |
223 |
actacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagaggtatttattaat |
295 |
Q |
| |
|
|| |||||||| |||||| |||||||||||| ||| ||| ||||||| ||| || || ||||||||||||||| |
|
|
| T |
20216898 |
acaacactaccctgctatggaggtaccatgtgcacgtgggcaggaagacgtcagatggtgaggtatttattaat |
20216825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 28244028 - 28244079
Alignment:
| Q |
187 |
accctgagcctcttgatgactatcccagtggcccacactacactaccatgct |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
28244028 |
accctgagcctcttgatgactatcccagtggcccacacgacactaccctgct |
28244079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 13121481 - 13121548
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt |
253 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
13121481 |
gaccctgagcctcttgatgactatccaagtgccccacacgacactactatgctgacgaggtaccatgt |
13121548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 46272260 - 46272150
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagagg |
284 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||| | |||| | |||| | || ||||||||| ||| ||| |||||||||| ||| || |||| |
|
|
| T |
46272260 |
gaccctgagccacacgatgactatcctggtggcccacacgagactaacctgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgagg |
46272161 |
T |
|
| Q |
285 |
tatttattaat |
295 |
Q |
| |
|
||||||||||| |
|
|
| T |
46272160 |
tatttattaat |
46272150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 47247262 - 47247372
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagagg |
284 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||| | |||| |||||| | || ||||||||| ||| ||| ||||||||| ||| || |||| |
|
|
| T |
47247262 |
gaccctgagccacacgatgactatcccggtggcccacacgagactagcatgctttggaagtaccatgtgcacgtggccaggaaggctggtgatggcgagg |
47247361 |
T |
|
| Q |
285 |
tatttattaat |
295 |
Q |
| |
|
||||| ||||| |
|
|
| T |
47247362 |
tattttttaat |
47247372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 13681605 - 13681716
Alignment:
| Q |
178 |
tggtgccagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatga |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||| ||||| || |||| | |||||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
13681605 |
tggtgccataccctgagcctcttgatgactatcctggtggcccacacgacacttccctgctgtggaggtaccatgtgcacgtggccaggaaggcgtctga |
13681704 |
T |
|
| Q |
277 |
gggagaggtatt |
288 |
Q |
| |
|
||| |||||||| |
|
|
| T |
13681705 |
gggcgaggtatt |
13681716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 25062914 - 25062845
Alignment:
| Q |
184 |
cagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt |
253 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
25062914 |
cagaccttaagcctcttgatgactatcccggtggcccacacgacactaccaagctgacgaggtaccatgt |
25062845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 12384867 - 12384942
Alignment:
| Q |
179 |
ggtgccagaccctgagcc-tcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgtc |
254 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||| ||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
12384867 |
ggtgtcagaccctgagcaatcttgatgactatccaagtg-cccacacaacactaccctgctgatgaggtaccatgtc |
12384942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0964 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0964
Description:
Target: scaffold0964; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 3257 - 3140
Alignment:
| Q |
179 |
ggtgccagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgtcact-tggtcaggaaggcgtatgag |
277 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||| ||||||||||| |||||||| ||||| ||||||||||||| | | | ||||||||||| |||| |
|
|
| T |
3257 |
ggtgccagaccatgagcctctggatagttatccaggtggcccacacgacactaccctgctaacgaggtaccatgtccatgtagccaggaaggcgtctgag |
3158 |
T |
|
| Q |
278 |
ggagaggtatttattaat |
295 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
3157 |
ggagaggtacttattaat |
3140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 901203 - 901317
Alignment:
| Q |
182 |
gccagaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgaggga |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||| |||| ||| ||| ||| || |||||||| ||||||| |
|
|
| T |
901203 |
gccagaccctgagcctcttgatgactatcctggtggcccacacgatactaccctgctgatgagataccttgtacacgtggccaagaaggcgtctgaggga |
901302 |
T |
|
| Q |
281 |
gaggtatttattaat |
295 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
901303 |
gtggtacgtattaat |
901317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 23148842 - 23148791
Alignment:
| Q |
182 |
gccagaccctgagcctcttgatgactatcccagtggcccacactacactacc |
233 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
23148842 |
gccataccctaagtctcttgatgactatcccggtggcccacacgacactacc |
23148791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 21638838 - 21638948
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagagg |
284 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||| ||||| | || | | |||||||||||| ||| ||| |||||||||| ||| || |||| |
|
|
| T |
21638838 |
gaccctgagccacttgatgactatctcggtggcccacacgacactggcctgttgtggaggtaccatgtgcacgtggccaggaaggcggctgatggcgagg |
21638937 |
T |
|
| Q |
285 |
tatttattaat |
295 |
Q |
| |
|
| ||||||||| |
|
|
| T |
21638938 |
tttttattaat |
21638948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 17222224 - 17222176
Alignment:
| Q |
184 |
cagaccctgagcctcttgatgactatcccagtggcccacactacactac |
232 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
17222224 |
cagactctaagcctcttgatgactatcccaatggcccacacgacactac |
17222176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 42722577 - 42722684
Alignment:
| Q |
189 |
cctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagaggtat |
287 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||| | ||| | |||| | |||||||||||| ||| ||| |||||||||| ||| || | ||||| |
|
|
| T |
42722577 |
cctgagccactagatgactatcccggtggcccacacgagactggcctgctgtggaggtaccatgtgcacgtggccaggaaggcggctgatggtgtggtat |
42722676 |
T |
|
| Q |
288 |
ttattaat |
295 |
Q |
| |
|
|||||||| |
|
|
| T |
42722677 |
ttattaat |
42722684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 51897048 - 51897134
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcg |
271 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||| | ||| | |||| | |||||||||||| ||| ||| |||||||||| |
|
|
| T |
51897048 |
gaccctgagccactagatgactatcccggtggcccacacgagactggcctgctgtggaggtaccatgtgcacgtggccaggaaggcg |
51897134 |
T |
|
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 42099058 - 42098948
Alignment:
| Q |
186 |
gaccctgagcctcttgatgactatcccagtggcccacactacactaccatgctatagaggtaccatgt-cacttggtcaggaaggcgtatgagggagagg |
284 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||| | ||| | |||| | || ||||||||| ||| ||| |||||||||| ||| || |||| |
|
|
| T |
42099058 |
gaccctgagccattagatgactatccccgtggcccacacgagactgacctgctgtggaagtaccatgtgcacgtggccaggaaggcggctgatggcgagg |
42098959 |
T |
|
| Q |
285 |
tatttattaat |
295 |
Q |
| |
|
||||||||||| |
|
|
| T |
42098958 |
tatttattaat |
42098948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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