View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_45 (Length: 270)
Name: NF0648_low_45
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 19152439 - 19152239
Alignment:
| Q |
41 |
catcatcatgggttcctcttcattaccatctttcattcagatttccaccttctgtgaaaaactcaacacacctcaaaagaaggttcagttaggaataaca |
140 |
Q |
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| T |
19152439 |
catcatcatgggttcctcttcattaccatctttcattcagatttccaccttctgtgaaaaactcagcacccctcaaaagaaggttcagttaggaataaca |
19152340 |
T |
|
| Q |
141 |
aaaaatgacacaaagttttcttgctccttatcttctcatcattcttacaatattcttcaaaaatcagttcctttggctgcttccattgcaattcttctct |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19152339 |
aaaaatgacacaaagttttcttgctccttatcttctcatcattcttacaatattcttcaaaaatcagttcctttagctgcttccattgcaattcttctct |
19152240 |
T |
|
| Q |
241 |
g |
241 |
Q |
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| T |
19152239 |
g |
19152239 |
T |
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