View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_49 (Length: 264)
Name: NF0648_low_49
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 15928564 - 15928352
Alignment:
| Q |
5 |
agttgtgatttaagttatcatgagaatcaaaccaaattacatgtatcttcgtctgatcctcttaggacccttgttttggtcactattaaggccccaattg |
104 |
Q |
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| T |
15928564 |
agttgtgatttaaatcatcatgagaataaaaaaaaattacatgtatctccgtctcatcctctcaggacccttgttttggtcactattaagatccaaattg |
15928465 |
T |
|
| Q |
105 |
gctcctaagtttgcagtagaatggttaaaggtagcaccccaaattgaaccgcttgttggaggatacaaaggtggttttgcttggaatgggacatggttgt |
204 |
Q |
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| T |
15928464 |
actcctgagtttgcagtagaatggttaaaggtagcaccccaaactgaaccacttgttggaggatacaaagctggttttgtttggaaagggacatgattgt |
15928365 |
T |
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| Q |
205 |
aatttccctccat |
217 |
Q |
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||||| ||||||| |
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| T |
15928364 |
aattttcctccat |
15928352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26423374 - 26423142
Alignment:
| Q |
1 |
ttgcagttgtgatttaagtta--tcatgagaatcaaaccaaattacatgtatcttcgtctgatcctcttaggacccttgttttggtcactattaaggccc |
98 |
Q |
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||||||||||||||||| | | |||||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||| ||| |
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| T |
26423374 |
ttgcagttgtgatttaaatcaattcatgataatcaaaccaaattacatgtagctccgtctgatcctcttaggattcatgttttggtcactattaagaccc |
26423275 |
T |
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| Q |
99 |
caattggctcctaagtttgcagtagaatggttaaaggtagcaccccaaattgaaccgcttgttggaggatacaaaggtggttttgcttggaatgggacat |
198 |
Q |
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| T |
26423274 |
aaattagctcttaagtttgcagcagaatggttaaaggtagcaccccaaaccgaaccacttgttggaggacacaaaggtggttttgtttggaaagggacat |
26423175 |
T |
|
| Q |
199 |
ggttgtaatttccctccatttcactgatgatgt |
231 |
Q |
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|||||||||||||||| || |||| ||||||| |
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| T |
26423174 |
ggttgtaatttccctctatatcacccatgatgt |
26423142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 24631590 - 24631734
Alignment:
| Q |
85 |
cactattaaggccccaattggctcctaagtttgcagtagaatggttaaaggtagcaccccaaattgaaccgcttgttggaggatacaaaggtggttttgc |
184 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| || |
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| T |
24631590 |
cactattaagacccaaattggctcctaagtttgcagtagaatggttaaaggcagcaccccaaactgaaccacttgttggaggatacaaaggtggttctgt |
24631689 |
T |
|
| Q |
185 |
ttggaatgggacatggttgtaatttccctccatttcactgatgat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24631690 |
ttggaatgggacatggttgtaatttccctccatttcacttatgat |
24631734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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