View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_53 (Length: 256)
Name: NF0648_low_53
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_53 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 7161487 - 7161704
Alignment:
| Q |
16 |
atacccgaaggattgggtgcaaaatctgacttctctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaattgaaatttggtttaag |
115 |
Q |
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| T |
7161487 |
atacctgaaggattgggtgcaaaatctgacttccctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaattgaaatttggtttaag |
7161586 |
T |
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| Q |
116 |
gacgacctcaactatcttccttccttgcaaaatattgatcgaagtttcatattgttccgatctaaagtcattgccggagtggatttgcaacctctcgtca |
215 |
Q |
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| T |
7161587 |
gacgacctaaactatcttccatccttgcaaaatatt----gaagtttcatattgttccgatctaaagtcattgccggattggatttgcaacctctcgtca |
7161682 |
T |
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| Q |
216 |
cttctacatatcaccattaaag |
237 |
Q |
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|||| |||||||||||||||| |
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| T |
7161683 |
cttcagcatatcaccattaaag |
7161704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 3917237 - 3917035
Alignment:
| Q |
27 |
attgggtgcaaaatctgacttctctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaattgaaatttggtttaaggacgacctcaa |
126 |
Q |
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| T |
3917237 |
attgggtgcgaaatctatcttctcttgagcatcttagttttatgaagcttccaaatcagacatttcaggaaattggaatttggtttaaggaagagatcag |
3917138 |
T |
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| Q |
127 |
ctatcttccttccttgcaaaatattgatcgaagtttcatattgttccgatctaaagtcattgccggagtggatttgcaacctctcgtcacttctacatat |
226 |
Q |
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| T |
3917137 |
ctatcttccttccctgcaaaaaatt----aaattttggcattgttcagatctaatggcattgcctgattggattttcaacatctcctcacttcagcatat |
3917042 |
T |
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| Q |
227 |
caccatt |
233 |
Q |
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| T |
3917041 |
aaccatt |
3917035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 3171897 - 3171696
Alignment:
| Q |
27 |
attgggtgcaaaatctgacttctctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaattgaaatttggtttaaggacgacctcaa |
126 |
Q |
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| T |
3171897 |
attggatgcaaaatctgacttctctgaagcatctagtttttggtcatcttccaagtcaaacatttcaggaaatccaaatttcatttcaggacgatctcaa |
3171798 |
T |
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| Q |
127 |
ctatcttccttccttgcaaaatattgatcgaagtttcatattgttccgatctaaagtcattgccggagtggatttgcaacctctcgtcacttctacatat |
226 |
Q |
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| T |
3171797 |
ctatcttccttccttgcgaaatatt----aaattttgcaattgttcgtatctaaaggcattgccagactggatttgcaacctctcgtcacttcagcatat |
3171702 |
T |
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| Q |
227 |
caccat |
232 |
Q |
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|||||| |
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| T |
3171701 |
caccat |
3171696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 3280529 - 3280478
Alignment:
| Q |
87 |
catttcaggaaattgaaatttggtttaaggacgacctcaactatcttccttc |
138 |
Q |
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| T |
3280529 |
catttcaggaaattgaaacttggtttaaggatgacctgaagtgtcttccttc |
3280478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 47549 - 47669
Alignment:
| Q |
23 |
aaggattgggtgcaaaatctgacttctctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaattgaaatttggtttaaggacgacc |
122 |
Q |
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| T |
47549 |
aaggattgggtgcaaaatttgacttctcttgatcatattggtttgtactcgcttccaaatcaatcatttcaggaaattgaaaattggtttgtggaagacc |
47648 |
T |
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| Q |
123 |
tcaactatcttccttccttgc |
143 |
Q |
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| T |
47649 |
ccaactatctcccttccttgc |
47669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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