View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_55 (Length: 255)
Name: NF0648_low_55
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 24195186 - 24194954
Alignment:
| Q |
1 |
agatgtatgcttatcctttttgtgccttattgcttcttccaatttgaagttacccaaaccatccctatacttatccaaatttgcgtggattgcatccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| || |
|
|
| T |
24195186 |
agatgtatgcttatcctttttgtgccttattgcttcttccaatttgaagttacccaaaccatccctatacttatccaaatctccatggattgcatccgca |
24195087 |
T |
|
| Q |
101 |
ttttcaggagaagaagcaagccttctaatgcattcataaaggctctgctccaacaaatcatcatcatttatttctggattgttataaaagtgcttcggat |
200 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24195086 |
ttttcaggagaataagcaagctttctaatgcattcataaaggccctgctccaacaaatcatcatcatttatttctggattgttataaaagtgcttcggat |
24194987 |
T |
|
| Q |
201 |
tgagaaaatgtcctgctgcatgcaacggatgat |
233 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
24194986 |
tcagaaaatgtcctgctgcatgcaacggatgat |
24194954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3070969 - 3071203
Alignment:
| Q |
1 |
agatgtatgcttatcctttttgtgccttattgcttcttccaatttgaagttacccaaaccatccctatacttatccaaatttgcgtggattgcatccaca |
100 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||||| |||||| | ||||||||||||| | |||||||||| ||||| || ||||| |||| | | |
|
|
| T |
3070969 |
agatgtacgcttatcatctttgtgccttattgcttcctccaatctaaagttacccaaacaagccctatactttgacaaatccgcatggatgtcatctaga |
3071068 |
T |
|
| Q |
101 |
ttttcaggagaagaagcaagccttctaatgcattcataaaggctctgctccaacaaatcatcatcatttatttctggattgttataaaagtgcttcggat |
200 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||| | | ||| | |||||||| || |||| ||||||||||||||| |||||||||| |
|
|
| T |
3071069 |
ttttcatgagaagaacaaagctttctaatgcattcataaaggccatccaacaatagatcatcattatccatttgtggattgttataaaaatgcttcggat |
3071168 |
T |
|
| Q |
201 |
tgagaaaatgtcctgctgcatgcaacggatgatgt |
235 |
Q |
| |
|
| ||| ||||| | |||||||||||| |||||||| |
|
|
| T |
3071169 |
tcagataatgttcagctgcatgcaacagatgatgt |
3071203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9445483 - 9445709
Alignment:
| Q |
1 |
agatgtatgcttatcctttttgtgccttattgcttcttccaatttgaagttacccaaaccatccctatacttatccaaatttgcgtggattgcatccaca |
100 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||||||| | ||||||| ||| | |||||||||| | ||||| | ||||| |||||| | |
|
|
| T |
9445483 |
agatgtatgcttatcctctctatgccttattgcttcttccaatctaaagttacttgaacaagccctatacttttacaaatctctatggatgtcatccaaa |
9445582 |
T |
|
| Q |
101 |
ttttcaggagaagaagcaagccttctaatgcattcataaaggctctgctccaacaaatcatcatcatttatttctggattgttataaaagtgcttcggat |
200 |
Q |
| |
|
|||| ||||||| ||| |||| |||| |||||||||||||||| | | |||| |||||||| | |||| |||||||||||||||||| ||||||| |
|
|
| T |
9445583 |
tttttaggagaaaaagaaagctttcttatgcattcataaaggcaatccaacaacggatcatcattctccatttgtggattgttataaaagtgtttcggat |
9445682 |
T |
|
| Q |
201 |
tgagaaaatgtcctgctgcatgcaacg |
227 |
Q |
| |
|
| | | ||||||| || ||||||||| |
|
|
| T |
9445683 |
tcaaataatgtccaactacatgcaacg |
9445709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2947750 - 2947516
Alignment:
| Q |
1 |
agatgtatgcttatcctttttgtgccttattgcttcttccaatttgaagttacccaaaccatccctatacttatccaaatttgcgtggattgcatccaca |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |||| | || |||||| || | || ||||||| ||| | | || || |||||| | |
|
|
| T |
2947750 |
agatgtatgcttatcctctctgtgccttattgcttctttcaatctaaatttacccgcacaagccttatactttgacaattctctatgaatgtcatccata |
2947651 |
T |
|
| Q |
101 |
ttttcaggagaagaagcaagccttctaatgcattcataaaggctctgctccaacaaatcatcatcatttatttctggattgttataaaagtgcttcggat |
200 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| | | |||||||||||||| | |||| |||||||| ||||||||||||||||| |
|
|
| T |
2947650 |
ttttcaggagaagaagaaagctttctaatgcattcataaaggccatccaacaacaaatcatcattctccatttgtggattgtcataaaagtgcttcggat |
2947551 |
T |
|
| Q |
201 |
tgagaaaatgtcctgctgcatgcaacggatgatgt |
235 |
Q |
| |
|
| ||| ||||||| ||||||| |||| |||||||| |
|
|
| T |
2947550 |
tcagataatgtccagctgcatacaacagatgatgt |
2947516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3519 times since January 2019
Visitors: 4036