View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_6 (Length: 443)
Name: NF0648_low_6
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Original strand, 8204613 - 8205016
Alignment:
| Q |
15 |
ttgctgatgatgttttctcactctttgttagtgaagaagttgataaagttgaacttttgtacactaaatttgtgtcattagtgaaatcagagcctataat |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8204613 |
ttgcggatgatgttttctcactctttgttagtgaagaagttgacaaagttgaacttttgtacactaaatttgtgtcattagtgaaatcagagcctataat |
8204712 |
T |
|
| Q |
115 |
ccatactttgcttccactgtcaccaaaaggtgaaatctgtgatattaatggaaactgtgttgatgctgccgaggatgagcttttcaggttaacaacaaaa |
214 |
Q |
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| T |
8204713 |
ccatactttgcttccactgtcaccaaaaggtgaaatctgtgatattaatggaaactgtgttgatgctgccgaggatgagcttttcaggttaacaacaaaa |
8204812 |
T |
|
| Q |
215 |
gaaggaaagttgactgttgaaagagatgctgttaggtctaagacgattgatttttcgccgattttgcagtttgagcaggatcctgttcagattcttgatg |
314 |
Q |
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| T |
8204813 |
gaaggaaagttaactgttgaaagagatgctgttaggtctaagacgattgatttttcgccgattttgcagtttgagcaggatcctgttcagattcttgatg |
8204912 |
T |
|
| Q |
315 |
cacttttgccactttatttgaacagtcaaatcttgagggctttgcaggaatcacttgctagtgaattagctgctagaatgagtgctatgagtagtgcttg |
414 |
Q |
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| T |
8204913 |
cacttttgccactttatttgaacagtcaaatcttgagggctttgcaggaatcacttgctagtgaattagctgctagaatgactgctatgagtagtgcttg |
8205012 |
T |
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| Q |
415 |
tgat |
418 |
Q |
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|||| |
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| T |
8205013 |
tgat |
8205016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 20693985 - 20694101
Alignment:
| Q |
287 |
gagcaggatcctgttcagattcttgatgcacttttgccactttatttgaacagtcaaatcttgagggctttgcaggaatcacttgctagtgaattagctg |
386 |
Q |
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||||| ||||||| |||||||||||||||| | |||||||||||||||| |||||| | |||| ||| ||||| |||||| | ||||||||| | |||| |
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| T |
20693985 |
gagcaagatcctgctcagattcttgatgcaatgatgccactttatttgaatagtcaagttttgaaggcattgcaagaatcattggctagtgaacttgctg |
20694084 |
T |
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| Q |
387 |
ctagaatgagtgctatg |
403 |
Q |
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| T |
20694085 |
caagaatgggtgctatg |
20694101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 20693710 - 20693765
Alignment:
| Q |
15 |
ttgctgatgatgttttctcactctttgttagtgaagaagttgataaagttgaactt |
70 |
Q |
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|||||||||||||||| || || ||||| | ||| ||||||||||||||||||||| |
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| T |
20693710 |
ttgctgatgatgttttttcgctgtttgtcactgaggaagttgataaagttgaactt |
20693765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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