View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_61 (Length: 251)

Name: NF0648_low_61
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_61
NF0648_low_61
[»] chr1 (4 HSPs)
chr1 (1-229)||(23182478-23182706)
chr1 (1-229)||(4976957-4977185)
chr1 (12-224)||(21741028-21741241)
chr1 (12-139)||(5316475-5316608)
[»] chr8 (1 HSPs)
chr8 (1-229)||(45472863-45473091)
[»] chr6 (2 HSPs)
chr6 (12-229)||(19740338-19740556)
chr6 (83-218)||(27994642-27994777)
[»] chr4 (4 HSPs)
chr4 (16-229)||(54780151-54780367)
chr4 (12-229)||(10430717-10430941)
chr4 (12-139)||(34768759-34768887)
chr4 (12-135)||(2975490-2975612)
[»] chr5 (1 HSPs)
chr5 (16-227)||(23284727-23284941)
[»] chr2 (4 HSPs)
chr2 (12-139)||(40506564-40506691)
chr2 (12-229)||(40445933-40446151)
chr2 (12-124)||(34693868-34693983)
chr2 (12-124)||(34716280-34716395)
[»] chr3 (1 HSPs)
chr3 (12-229)||(54577623-54577837)
[»] scaffold0012 (1 HSPs)
scaffold0012 (157-229)||(206769-206841)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23182478 - 23182706
Alignment:
Q  1 cattgcggattttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttcctcctagattgccgcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23182478 cattgcggattttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttccttctagattgccgcct 23182577  T
Q  101 aagattagaaagtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattg 200  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23182578 aagattagaaagtttgagtctggcgctgagaagcgtaggaaaaagaaaaaaattgctgagttagttgaatcccaaaaaggagccctggataaatttattg 23182677  T
Q  201 taaaagaaacacaaattcatattgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  23182678 taaaagaaacacaaattcatattgatgat 23182706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4977185 - 4976957
Alignment:
Q  1 cattgcggattttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttcctcctagattgccgcct 100  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4977185 cattgtggaatttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggctcctcctagattgccgcct 4977086  T
Q  101 aagattagaaagtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattg 200  Q
    |||||||||||||||||||||||||||||||||||||||             ||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  4977085 aagattagaaagtttgagtctggcgctgagaagcgtaggaaaaagaaaaaaattgatgagttaattgaatcccaaacaggagctctggataaatttattg 4976986  T
Q  201 taaaagaaacacaaattcatattgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  4976985 taaaagaaacacaaattcatattgatgat 4976957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 21741241 - 21741028
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttattt-aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaa 110  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||   ||||||||||||||||||||||||| |||    
T  21741241 ttgctcaagaacagtgaagaatttcaggttctttattttttttaatcttccactatgcctcctaaattttctcctcctagattgccgcctaagattcgaa 21741142  T
Q  111 agtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaac 210  Q
    |||||||||||||||||||||||||||||             ||||||||||| |||||||||||| ||||||||| |||||||||||| |||||||||     
T  21741141 agtttgagtctggcgctgagaagcgtaggaaaaagaaaaaaattgctgagttaattgaatcccaaacaggagctcttgataaatttattttaaaagaaat 21741042  T
Q  211 acaaattcatattg 224  Q
    |||||||| |||||    
T  21741041 acaaattcctattg 21741028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 5316475 - 5316608
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatt------tatttaatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagat 105  Q
    |||||||||||||||||||||||||| ||||||||||      | |||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  5316475 ttgctcaagaacagtgaagaatttcaagttctttattattatttttttaatcttcctctatgcctcctaaattgactcctcctatattgccgcctaagat 5316574  T
Q  106 tagaaagtttgagtctggcgctgagaagcgtagg 139  Q
    | ||||||||||||||||||||||||||||||||    
T  5316575 ttgaaagtttgagtctggcgctgagaagcgtagg 5316608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45472863 - 45473091
Alignment:
Q  1 cattgcggattttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttcctcctagattgccgcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  45472863 cattgcggattttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggctcctcctagattgctgcct 45472962  T
Q  101 aagattagaaagtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattg 200  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  45472963 aagattagaaagtttgagtctggcgctgagaagcgtaggaaaaagaaaaaaattgctgagttaattgaatcccaaacaggagctctggataaatttattg 45473062  T
Q  201 taaaagaaacacaaattcatattgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  45473063 taaaagaaacacaaattcatattgatgat 45473091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 19740556 - 19740338
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttat-ttaatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaa 110  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||    
T  19740556 ttgctcaagaacagtgaagaattttaggttctttatttttgttaatcttcctctatgcctcctaaattggatcctcctagattgtcgcctaagattcgaa 19740457  T
Q  111 agtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaac 210  Q
    ||||||||||||||||| |||||||||||             ||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  19740456 agtttgagtctggcgctaagaagcgtaggaaaaagaaaaaaattgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaac 19740357  T
Q  211 acaaattcatattgatgat 229  Q
    |||||||  ||||||||||    
T  19740356 acaaatttctattgatgat 19740338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 27994642 - 27994777
Alignment:
Q  83 cctcctagattgccgcctaagattagaaagtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggag 182  Q
    ||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||||                |||||||| |||||||||||| || ||    
T  27994642 cctcctaaattgtcgcctaaaattagaaagtttgagtctggtgctgagaagcgtaggaaaaagaaaaaagaatctgagttaattgaatcccaaacagaag 27994741  T
Q  183 ctctggataaatttattgtaaaagaaacacaaattc 218  Q
    || | |||||||||||||||||||||||||| ||||    
T  27994742 ctattgataaatttattgtaaaagaaacacatattc 27994777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 54780151 - 54780367
Alignment:
Q  16 tcaagaacagtgaagaatttcaggttctttatttattt---aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaaag 112  Q
    |||||||| ||||||||||||||||||||||||| |||   | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54780151 tcaagaacggtgaagaatttcaggttctttattttttttttattcttcctctatgcctcctaaattggctcctcctagattgccgcctaagattagaaag 54780250  T
Q  113 tttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaacac 212  Q
    ||||||||| |||||||||||||||||             ||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  54780251 tttgagtctcgcgctgagaagcgtaggaaaaagaaaaaaattgcttagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacac 54780350  T
Q  213 aaattcatattgatgat 229  Q
    |||||| | ||||||||    
T  54780351 aaattccttttgatgat 54780367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 10430941 - 10430717
Alignment:
Q  12 ttgctcaagaacagtgaagaatttca------ggttctttatttattt-aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaaga 104  Q
    ||||||||||||||||||||||||||      |||||||| ||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10430941 ttgctcaagaacagtgaagaatttcaatttctggttctttgttttttttaatcttcatctatgcctcctaaattggctcctcctagattgccgcctaaga 10430842  T
Q  105 ttagaaagtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaa 204  Q
    || ||||||||||||||||| ||||||||||||||             ||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  10430841 ttcgaaagtttgagtctggcactgagaagcgtaggaaaaagaaaaaaattgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaa 10430742  T
Q  205 agaaacacaaattcatattgatgat 229  Q
    |||||||||||||| ||||||||||    
T  10430741 agaaacacaaattcctattgatgat 10430717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 34768887 - 34768759
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttattt-aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaa 110  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||    
T  34768887 ttgctcaagaacggtgaagaatttcaggttctttattttttttaatcttcctgtatgcctcctaaattggctcctcctagattgccgcctaagattcgaa 34768788  T
Q  111 agtttgagtctggcgctgagaagcgtagg 139  Q
    |||||||||||||||||||||||||||||    
T  34768787 agtttgagtctggcgctgagaagcgtagg 34768759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 2975612 - 2975490
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttattt--aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattaga 109  Q
    ||||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||| |   |||||| |||||||||||||||||||    
T  2975612 ttgctcaagaacagtaaagaatttcaggttctttattttttttcaatcttcctctatgcctcctaaattag---ctcctatattgccgcctaagattaga 2975516  T
Q  110 aagtttgagtctggcgctgagaagcg 135  Q
    |||||||||||||| |||||||||||    
T  2975515 aagtttgagtctggagctgagaagcg 2975490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 23284941 - 23284727
Alignment:
Q  16 tcaagaacagtgaagaatttcaggttctttatttattt----aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||  |||||||| |||||||||||||||||| ||||||| |||    
T  23284941 tcaagaacagtgaagaatttcaggttctttatttatttttttaatcttcttctatgccttttaaattggctcctcctagattgccgcccaagattaaaaa 23284842  T
Q  112 gtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaaca 211  Q
    ||||||||||||||||||||||||||||             ||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||||    
T  23284841 gtttgagtctggcgctgagaagcgtagg-aaaaagaaaaaattgctgagttaattgaatcccaaacaggagctcttgaaaaatttattgtaaaagaaaca 23284743  T
Q  212 caaattcatattgatg 227  Q
    ||||||| ||||||||    
T  23284742 caaattcctattgatg 23284727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 40506564 - 40506691
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaaa 111  Q
    |||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40506564 ttgctcaagaacagtgaagaatctcatgttctttttttttttaatcttcctctatgcctcctaaattggctcctcctagattgccgcctaagattagaaa 40506663  T
Q  112 gtttgagtctggcgctgagaagcgtagg 139  Q
    |||||||||||||| ||||||| |||||    
T  40506664 gtttgagtctggcgttgagaagtgtagg 40506691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 40445933 - 40446151
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttattt-aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaa 110  Q
    |||||||||||| |||||  || ||| ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  40445933 ttgctcaagaactgtgaaatatctcatgttctttattttttttaatcttcctctatgcctcttaaattggctcctcctagattgccgcctaagattagaa 40446032  T
Q  111 agtttgagtctggcgctgagaagcgtagg-nnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaa 209  Q
    ||||||||||||||| ||||||| |||||              ||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  40446033 agtttgagtctggcgttgagaagtgtaggaaaaagaaaaaaaattgctgagttaattgaat-ccaaacaggagctcttgataattttattgtaaaagaaa 40446131  T
Q  210 cacaaattcatattgatgat 229  Q
    ||||||||| ||||||||||    
T  40446132 cacaaattcctattgatgat 40446151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 34693868 - 34693983
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttattt---aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattag 108  Q
    |||||||||||||||||||||||||||||||||||||| |||   ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |    
T  34693868 ttgctcaagaacagtgaagaatttcaggttctttattttttttttaattttcctctatgcctcctaaattggctcctcctagattgccacctaagattcg 34693967  T
Q  109 aaagtttgagtctggc 124  Q
    ||||||||||||||||    
T  34693968 aaagtttgagtctggc 34693983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 34716280 - 34716395
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttattt---aatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattag 108  Q
    |||||||||||||||||||||||||||||||||||||| |||   ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |    
T  34716280 ttgctcaagaacagtgaagaatttcaggttctttattttttttttaattttcctctatgcctcctaaattggctcctcctagattgccacctaagattcg 34716379  T
Q  109 aaagtttgagtctggc 124  Q
    ||||||||||||||||    
T  34716380 aaagtttgagtctggc 34716395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 54577837 - 54577623
Alignment:
Q  12 ttgctcaagaacagtgaagaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttcctcctagattgccgcctaagattagaaa 111  Q
    ||||||||||||||| |||||||| ||||| | || || || ||||||||||||||||||||||||||   ||||||| ||| || ||||||||||||||    
T  54577837 ttgctcaagaacagtcaagaattttaggttttatactttttcaatcttcctctatgcctcctaaattg---cctcctaaatttccacctaagattagaaa 54577741  T
Q  112 gtttgagtctggcgctgagaagcgtaggnnnnnnnnnnnnnttgctgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaaca 211  Q
    |||||||||||| |||||||||||||||               ||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||    
T  54577740 gtttgagtctggtgctgagaagcgtaggaaaaagaaaaaagaagctgagttaattgaatcccaaacatgagctcttgataaatttattgtaaaagaaaca 54577641  T
Q  212 caaattcatattgatgat 229  Q
    ||||||| ||||||||||    
T  54577640 caaattcttattgatgat 54577623  T

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Target: scaffold0012 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 206841 - 206769
Alignment:
Q  157 tgagttagttgaatcccaaaaaggagctctggataaatttattgtaaaagaaacacaaattcatattgatgat 229  Q
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T  206841 tgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacgcaagttcctattgatgat 206769  T

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