View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_62 (Length: 251)

Name: NF0648_low_62
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_62
NF0648_low_62
[»] scaffold0014 (1 HSPs)
scaffold0014 (13-251)||(110437-110675)
[»] chr8 (8 HSPs)
chr8 (13-251)||(30715575-30715813)
chr8 (13-251)||(30723353-30723591)
chr8 (161-243)||(29542121-29542203)
chr8 (13-157)||(29541920-29542064)
chr8 (82-147)||(21245784-21245849)
chr8 (24-62)||(11685684-11685722)
chr8 (82-147)||(37207818-37207883)
chr8 (211-251)||(23428122-23428162)
[»] chr5 (8 HSPs)
chr5 (13-251)||(16672069-16672307)
chr5 (13-251)||(21172545-21172783)
chr5 (13-251)||(23054734-23054972)
chr5 (13-251)||(35265900-35266138)
chr5 (161-249)||(18081142-18081230)
chr5 (16-66)||(18084716-18084766)
chr5 (24-62)||(26460762-26460800)
chr5 (193-232)||(1532928-1532967)
[»] chr4 (23 HSPs)
chr4 (13-251)||(12660545-12660783)
chr4 (13-251)||(16327073-16327311)
chr4 (13-251)||(30675059-30675297)
chr4 (13-251)||(1891909-1892147)
chr4 (13-251)||(23192649-23192887)
chr4 (13-251)||(25692528-25692769)
chr4 (161-251)||(12750131-12750221)
chr4 (161-251)||(2925445-2925535)
chr4 (163-251)||(26995955-26996043)
chr4 (191-251)||(25150053-25150113)
chr4 (16-66)||(2925682-2925732)
chr4 (193-251)||(53528489-53528547)
chr4 (82-147)||(12437332-12437397)
chr4 (161-240)||(22747772-22747850)
chr4 (16-58)||(12750375-12750417)
chr4 (25-64)||(9396534-9396573)
chr4 (193-251)||(13998788-13998846)
chr4 (25-63)||(18900570-18900608)
chr4 (25-63)||(23632102-23632140)
chr4 (82-147)||(12430868-12430933)
chr4 (82-147)||(29331748-29331813)
chr4 (82-147)||(42409215-42409280)
chr4 (82-147)||(48303395-48303460)
[»] chr2 (13 HSPs)
chr2 (13-251)||(19438893-19439131)
chr2 (13-251)||(43288748-43288986)
chr2 (13-251)||(25446418-25446656)
chr2 (161-242)||(17320995-17321076)
chr2 (161-251)||(21290856-21290946)
chr2 (161-243)||(19088259-19088341)
chr2 (13-98)||(25450951-25451036)
chr2 (161-251)||(16444614-16444704)
chr2 (163-243)||(33032493-33032573)
chr2 (160-243)||(6529479-6529562)
chr2 (19-59)||(33032295-33032335)
chr2 (25-64)||(17839867-17839906)
chr2 (188-251)||(25229613-25229676)
[»] chr1 (16 HSPs)
chr1 (13-251)||(37360305-37360543)
chr1 (13-251)||(18536329-18536567)
chr1 (13-251)||(31094298-31094536)
chr1 (13-158)||(11658798-11658943)
chr1 (161-249)||(26027515-26027603)
chr1 (191-240)||(27164606-27164655)
chr1 (16-66)||(29543944-29543994)
chr1 (161-232)||(33494187-33494259)
chr1 (163-251)||(40275473-40275561)
chr1 (212-251)||(11658964-11659003)
chr1 (25-64)||(27316076-27316115)
chr1 (27-64)||(14602992-14603029)
chr1 (197-243)||(3617996-3618042)
chr1 (26-64)||(32807628-32807666)
chr1 (82-147)||(28517382-28517447)
chr1 (82-147)||(38989208-38989273)
[»] chr7 (11 HSPs)
chr7 (13-251)||(341652-341890)
chr7 (13-251)||(8246671-8246910)
chr7 (13-157)||(26458010-26458154)
chr7 (161-251)||(26457862-26457952)
chr7 (160-251)||(34325111-34325201)
chr7 (16-66)||(34324917-34324967)
chr7 (82-147)||(29183633-29183698)
chr7 (193-232)||(25497911-25497950)
chr7 (193-232)||(42207775-42207814)
chr7 (197-232)||(42163517-42163552)
chr7 (198-251)||(23897565-23897618)
[»] chr3 (9 HSPs)
chr3 (13-251)||(15753854-15754092)
chr3 (13-251)||(21881986-21882224)
chr3 (13-251)||(49488083-49488321)
chr3 (19-251)||(20453277-20453522)
chr3 (159-251)||(13925257-13925348)
chr3 (160-251)||(17031899-17031991)
chr3 (163-251)||(44123129-44123214)
chr3 (193-232)||(13981885-13981924)
chr3 (160-232)||(10935910-10935983)
[»] chr6 (9 HSPs)
chr6 (161-251)||(14461971-14462061)
chr6 (161-251)||(19442379-19442469)
chr6 (160-219)||(6412794-6412853)
chr6 (20-105)||(6412919-6413004)
chr6 (24-66)||(19818107-19818149)
chr6 (193-251)||(6931917-6931974)
chr6 (178-243)||(19817895-19817960)
chr6 (82-147)||(23425590-23425655)
chr6 (25-66)||(34267486-34267527)
[»] scaffold0062 (2 HSPs)
scaffold0062 (161-250)||(18715-18804)
scaffold0062 (161-250)||(28883-28972)
[»] scaffold0102 (2 HSPs)
scaffold0102 (188-241)||(10790-10843)
scaffold0102 (23-70)||(10590-10637)


Alignment Details
Target: scaffold0014 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 110437 - 110675
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  110437 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 110536  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  110537 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 110636  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  110637 acttgaagatgtgaagttaattagatatataagattttt 110675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 30715813 - 30715575
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  30715813 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 30715714  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30715713 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 30715614  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30715613 acttgaagatgtgaagttaattagatatataagattttt 30715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 30723591 - 30723353
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||       || |||||||||||| ||||| |||||||||||||    
T  30723591 gagatgtatgaaaaataaagagatctcgataaattgtgtcatgaatggaatgaggtggaacaaaattaaaagtcaacgttgacgatctttttgcttataa 30723492  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||| ||||||||||| ||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  30723491 catagcgctatatgtaatgagtgttaatgaggatcatgaattaaaaaatgaaatcaaactcactttgtaaagtcgaactttttggacttgtagtccgcat 30723392  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30723391 acttgaagatgtgaagttaattagatatataagattttt 30723353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 29542121 - 29542203
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatata 243  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29542121 tgaaatcaaactcgctttgtaaagctaaactttttggacttgtagtccccacacttgaagatgtgaagttaattagatatata 29542203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 29541920 - 29542064
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |        | |||||||||||| | ||||||||||| |||||    
T  29541920 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggttgaacaaaagtgaaagtcaacgttgatgatgtttttgcatataa 29542019  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaa 157  Q
     | || ||||||||||||  ||| ||| ||||||| || ||||||    
T  29542020 tatagagctatatgtgattggtgataatgaggatcatgaattaaa 29542064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 21245784 - 21245849
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||||||||||| |||||||||||    
T  21245784 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtgatgagtgataacgaggatc 21245849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 11685722 - 11685684
Alignment:
Q  24 aaaataaagagatctcgataaattatgtcatgaatgaaa 62  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  11685722 aaaataaagagatctcggtaaattatgtcatgaatgaaa 11685684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 37207818 - 37207883
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  37207818 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 37207883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 23428122 - 23428162
Alignment:
Q  211 acacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||| |||||||||||||||||||||||| || |||||||    
T  23428122 acactcgaagatgtgaagttaattagatatgtatgattttt 23428162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 16672069 - 16672307
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||| |||||||||||||    
T  16672069 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggaacaaaatttaaagtcaacgttgacgatatttttgcttataa 16672168  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16672169 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 16672268  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16672269 acttgaagatgtgaagttaattagatatataagattttt 16672307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 21172783 - 21172545
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  21172783 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 21172684  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21172683 cataacgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 21172584  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21172583 acttgaagatgtgaagttaattagatatataagattttt 21172545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 23054972 - 23054734
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  23054972 gagatgtataaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 23054873  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23054872 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 23054773  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23054772 acttgaagatgtgaagttaattagatatataagattttt 23054734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 35266138 - 35265900
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| ||| |||||||||||||||    
T  35266138 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacggtgtttttgcttataa 35266039  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35266038 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 35265939  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35265938 acttgaagatgtgaagttaattagatatataagattttt 35265900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 18081230 - 18081142
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattt 249  Q
    |||||||||||||| |||| ||||  ||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||||    
T  18081230 tgaaatcaaactcgatttgcaaagctgaattttttggacctgtagtccgcacactcgaagatgtgaagttaattagatatgtatgattt 18081142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 18084766 - 18084716
Alignment:
Q  16 atgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgag 66  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  18084766 atgtatgaaaaagaaagagatctcgataaattatgtcatgaatggaatgag 18084716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 26460800 - 26460762
Alignment:
Q  24 aaaataaagagatctcgataaattatgtcatgaatgaaa 62  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26460800 aaaataaagagatctcgataaattatgtcatgaatgaaa 26460762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 1532967 - 1532928
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  1532967 tttggacttgtagtctgcacacttgaaggtgtgaagttaa 1532928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 12660783 - 12660545
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  12660783 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 12660684  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12660683 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 12660584  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12660583 acttgaagatgtgaagttaattagatatataagattttt 12660545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 16327311 - 16327073
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  16327311 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 16327212  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16327211 catagcgttatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 16327112  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16327111 acttgaagatgtgaagttaattagatatataagattttt 16327073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 30675297 - 30675059
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| || ||||||||||||||||    
T  30675297 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacaatgtttttgcttataa 30675198  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30675197 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 30675098  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30675097 acttgaagatgtgaagttaattagatatataagattttt 30675059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 1892147 - 1891909
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  1892147 gagatgtatgaaaaataaagagatctcgataaatcatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 1892048  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  1892047 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtgcgcac 1891948  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1891947 acttgaagatgtgaagttaattagatatataagattttt 1891909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 23192649 - 23192887
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  23192649 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 23192748  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||    
T  23192749 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaacacgctttataaagtcgaactttttggacttgtggtcctcac 23192848  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  23192849 acttgaagatgtaaagttaattagatatataagattttt 23192887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 25692769 - 25692528
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnn---tttaaagtcaacgttaacgatgtttttgctta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          |  |||||||||||| || |||||||||||||    
T  25692769 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaaaaataaaaagtcaacgttgacaatgtttttgctta 25692670  T
Q  110 taacaaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccg 209  Q
    |||||  ||||||||||| ||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  25692669 taacatggcgctatatgtaatgagtgttaatgaggatcatggattaaaaaataaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccg 25692570  T
Q  210 cacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  25692569 catacttgaagatgtgaagttaattagatatataagattttt 25692528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 12750221 - 12750131
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||| ||||  ||| |||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  12750221 tgaaatcaaactcgctttgcaaagctgaatttttcggacctgtagtccgcacactcgaagatgtgaagttaattagatatgtaagattttt 12750131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 2925535 - 2925445
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||| |||   |||  |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  2925535 tgaaatcaaactcgctttgcaaaactgaatcttttggacttgtagtccgcacactcgaagatgtgaagttaattagatatgtatgattttt 2925445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 26995955 - 26996043
Alignment:
Q  163 aaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||| ||||||||||  |||  |||||||| ||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  26995955 aaatcaaactcactttgtaaagctgaatcttttggacctgtagtccgcacactcgaagatgtgaagttaattagatatgtatgattttt 26996043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 25150053 - 25150113
Alignment:
Q  191 tttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||| ||| ||||||||||||||  |||||||||||||||||| |||||||    
T  25150053 tttttggacttgtaatccacacacttgaagatgcaaagttaattagatatatatgattttt 25150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 2925732 - 2925682
Alignment:
Q  16 atgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgag 66  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  2925732 atgtatgagaaagaaagagatctcgataaattatgtcatgaatggaatgag 2925682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 53528489 - 53528547
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||| ||||||||||| ||||||||||| | |||||||| |||||||    
T  53528489 tttggacttgtagtccacacacttgaaggtgtgaagttaaatggatatatatgattttt 53528547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 12437397 - 12437332
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||||||||||| |||||||||||    
T  12437397 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtgatgagtgataacgaggatc 12437332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 22747772 - 22747850
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatat 240  Q
    ||||||||||||||||||| ||||  | | |||||| || |||||||||||||||  |||||||||| ||||||||||||    
T  22747772 tgaaatcaaactcgctttgcaaagctgga-tttttgaacctgtagtccgcacactcaaagatgtgaaattaattagatat 22747850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 12750417 - 12750375
Alignment:
Q  16 atgtatgaaaaataaagagatctcgataaattatgtcatgaat 58  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  12750417 atgtatgaaaaagaaagagatatcgataaattatgtcatgaat 12750375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 9396534 - 9396573
Alignment:
Q  25 aaataaagagatctcgataaattatgtcatgaatgaaatg 64  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  9396534 aaataaaaagatctcgataaattatgtaatgaatgaaatg 9396573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 13998788 - 13998846
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||| ||||||||||| || |||||||| ||||||||||| | |||||||| |||||||    
T  13998788 tttgaacttgtagtcctcaaacttgaaggtgtgaagttaaatggatatatatgattttt 13998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 18900608 - 18900570
Alignment:
Q  25 aaataaagagatctcgataaattatgtcatgaatgaaat 63  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  18900608 aaataaagagatctcgataaactatgtgatgaatgaaat 18900570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 23632140 - 23632102
Alignment:
Q  25 aaataaagagatctcgataaattatgtcatgaatgaaat 63  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  23632140 aaataaagagaactcgataaactatgtcatgaatgaaat 23632102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 12430933 - 12430868
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  12430933 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 12430868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 29331748 - 29331813
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  29331748 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 29331813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 42409215 - 42409280
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  42409215 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 42409280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 48303460 - 48303395
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||||| ||||||| |||||||   || |||||||||||    
T  48303460 aagtcaacgttgacgatatttttgcatataacatagcgctaaatgtgatagatgataacgaggatc 48303395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 19439131 - 19438893
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  19439131 gagatgtataaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 19439032  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19439031 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 19438932  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19438931 acttgaagatgtgaagttaattagatatataagattttt 19438893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 43288986 - 43288748
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  43288986 gagatgtatgaaaaataaagagatctcgataaatgatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 43288887  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43288886 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 43288787  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43288786 acttgaagatgtgaagttaattagatatataagattttt 43288748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 25446656 - 25446418
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  25446656 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 25446557  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25446556 catagcgctatatgtgatgagtgttaatgaggatcatggagtaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 25446457  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  25446456 acttaaagatgtgaagttaattagatatataagattttt 25446418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 17321076 - 17320995
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatat 242  Q
    ||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17321076 tgaaatcaaactcgctttgcaaagttgaattttttggatttgtagtccgcacacttgaagatgtgaagttaattagatatat 17320995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 21290946 - 21290856
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  21290946 tgaaatcaaactcgctttgtaaagctgaattttttggacctgtagtccgcacactcgaagatgtgaagttaattagatatgtatgattttt 21290856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 19088259 - 19088341
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatata 243  Q
    |||||||||||||||||||||||   ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  19088259 tgaaatcaaactcgctttgtaaaagtgaattttttggacttgtagtccgcgcactcgaagatgtgaagttaattagatatata 19088341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 25451036 - 25450951
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||    
T  25451036 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgat 25450951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 16444704 - 16444614
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||||  ||| ||||||||| ||||| || |||||| |||||||||||||||||||||||| || |||||||    
T  16444704 tgaaatcaaactcgctttgtaaagctgaattttttggacatgtagaccacacactcgaagatgtgaagttaattagatatgtatgattttt 16444614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 33032493 - 33032573
Alignment:
Q  163 aaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatata 243  Q
    |||||||||||| || |||||||  ||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||    
T  33032493 aaatcaaactcgtttcgtaaagtaaaactttttggacttgtagtcctcacatttgaagatgtaaagttaattaaatatata 33032573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 6529479 - 6529562
Alignment:
Q  160 atgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatata 243  Q
    ||||||||||||| || |||||||    |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  6529479 atgaaatcaaacttgccttgtaaaacaaaactttttagtcttgtagtcctcacacttgaagatgtgaagttaattagatatata 6529562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 33032295 - 33032335
Alignment:
Q  19 tatgaaaaataaagagatctcgataaattatgtcatgaatg 59  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  33032295 tatgaaaaataaagagatcacgataaattatgtcatgaatg 33032335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 17839867 - 17839906
Alignment:
Q  25 aaataaagagatctcgataaattatgtcatgaatgaaatg 64  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  17839867 aaataaagagatctcgataaattatgtcatggatgaaatg 17839906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 25229613 - 25229676
Alignment:
Q  188 aactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||| ||||||| |||||||| |||||| |||||||||||||||| | |||||||| |||||||    
T  25229613 aactctttggacctgtagtccacacactcgaagatgtgaagttaaatggatatatatgattttt 25229676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 37360543 - 37360305
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  37360543 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 37360444  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37360443 catagcgttatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 37360344  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37360343 acttgaagatgtgaagttaattagatatataagattttt 37360305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 18536567 - 18536329
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  18536567 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 18536468  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||    
T  18536467 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaacccgctttgtaaagtcgaactttttggacttgtggtcctcac 18536368  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  18536367 acttgaagatgtaaagttaattagatatataagattttt 18536329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 31094536 - 31094298
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||       || ||||||||||||  ||||||||||||||||||    
T  31094536 gagatgtatgaaaaataaagagatctcgataaattttgtcatgaatggaatgaggtggaacaaaattaaaagtcaacgttgtcgatgtttttgcttataa 31094437  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31094436 catagcgctatatgtgatgagtgttaatgaggatcatggattaaaaaatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcat 31094337  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31094336 acttgaagatgtgaagttaattagatatataagattttt 31094298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 11658798 - 11658943
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||       || |||||||||||| ||||| |||||||||||||    
T  11658798 gagatgtatgaaaaataaagagatctcgataaattgtgtcatgaatggaatgaggtggaacaaaattaaaagtcaacgttgacgatatttttgcttataa 11658897  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaa 158  Q
    || |||||||||||||||||||||||| ||||||| ||||||||||    
T  11658898 catagcgctatatgtgatgagtgttaatgaggatcatggattaaaa 11658943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 26027515 - 26027603
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattt 249  Q
    ||||||||||||||||||| ||||   || ||||||||| |||||||| ||||| |||||||||||||||||||| |||| || |||||    
T  26027515 tgaaatcaaactcgctttgcaaagctaaattttttggacctgtagtcctcacacatgaagatgtgaagttaattaaatatgtatgattt 26027603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 27164655 - 27164606
Alignment:
Q  191 tttttggacttgtagtccgcacacttgaagatgtgaagttaattagatat 240  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  27164655 tttttggacttgtattctgcacacttgaagatgtgaagttaattagatat 27164606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 29543944 - 29543994
Alignment:
Q  16 atgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgag 66  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  29543944 atgtatgaaaaagaaagagatctcaataaattatgtcatgaatggaatgag 29543994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 33494259 - 33494187
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactt-tttggacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    |||||||||||||||||  | |||  || ||| |||||||||||||||||||||||||||| |||||||||||    
T  33494259 tgaaatcaaactcgcttcatgaagcagaccttgtttggacttgtagtccgcacacttgaaggtgtgaagttaa 33494187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 40275561 - 40275473
Alignment:
Q  163 aaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||| ||||||||||||   |||  |||||||| |||||||| |||| | |||||||||||||||||||| ||| || |||||||    
T  40275561 aaatcaaattcgctttgtaaaactgaatcttttggacctgtagtccacacattcgaagatgtgaagttaattagttatgtatgattttt 40275473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 11658964 - 11659003
Alignment:
Q  212 cacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  11658964 cacttaaagatgtgaagttaattagatatataagattttt 11659003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 27316076 - 27316115
Alignment:
Q  25 aaataaagagatctcgataaattatgtcatgaatgaaatg 64  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  27316076 aaataaagagatctcgataaattatgtcattaatgaaatg 27316115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 14602992 - 14603029
Alignment:
Q  27 ataaagagatctcgataaattatgtcatgaatgaaatg 64  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14602992 ataaagagatctcgataaactatgtcatgaatgaaatg 14603029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 3618042 - 3617996
Alignment:
Q  197 gacttgtagtccgcacacttgaagatgtgaagttaattagatatata 243  Q
    |||||||||||| ||||||||||| ||||||||||| | ||||||||    
T  3618042 gacttgtagtccccacacttgaaggtgtgaagttaaatggatatata 3617996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 32807628 - 32807666
Alignment:
Q  26 aataaagagatctcgataaattatgtcatgaatgaaatg 64  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  32807628 aatatagagatctcgataaactatgtcatgaatgaaatg 32807666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 28517382 - 28517447
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  28517382 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 28517447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 38989208 - 38989273
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  38989208 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 38989273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 341890 - 341652
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  341890 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 341791  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  341790 cataacgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcaaactttttggacttgtggtccgcac 341691  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  341690 acttgaagatgtgaagttaattagatatataagattttt 341652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 8246671 - 8246910
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaa-gtcaacgttaacgatgtttttgcttata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         |||| ||||||||| ||||||||||||||||||    
T  8246671 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaaaataaaagtcaacgttgacgatgtttttgcttata 8246770  T
Q  112 acaaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgca 211  Q
    ||| |||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8246771 acatagcgttatatgtgatgagtgttaatgaggatcatggattaaaaaatgaaatcaaactcgctttgtaaagttgaactttttggacttgtagtccgca 8246870  T
Q  212 cacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8246871 cacttgaagatgtgaagttaattagatatataagattttt 8246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 26458154 - 26458010
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||        ||||||||||| || | ||||||||||| |||||    
T  26458154 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggattgaggtggaaccaaaattaaagtcaacattgatgatgtttttgcatataa 26458055  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaa 157  Q
     | |||||||||||||||  ||| ||| ||||||| || ||||||    
T  26458054 tatagcgctatatgtgattggtgataatgaggatcatgaattaaa 26458010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 26457952 - 26457862
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||||   ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  26457952 tgaaatcaaactcgctttgtaaagctaaactttttatacttgtagtacgcacacttgaagatgtgaagttaattagatatatacgattttt 26457862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 34325111 - 34325201
Alignment:
Q  160 atgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||| ||||| ||||  ||| |||||| || ||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  34325111 atgaaatcaaactcactttgcaaagctgaa-tttttgtacctgtagtccgcacactcgaagatgtgaagttaattagatatgtatgattttt 34325201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34324917 - 34324967
Alignment:
Q  16 atgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgag 66  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  34324917 atgtatgaaaaagaaagagatctcgataaattatgtcatgaatggaatgag 34324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 29183633 - 29183698
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||||||||||| |||||||||||    
T  29183633 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtgatgagtgataacgaggatc 29183698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 25497911 - 25497950
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  25497911 tttggacttgtagtccgcacacttgaaggtgtgaagttaa 25497950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 42207775 - 42207814
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  42207775 tttggacttgtagtccgcacacttgaaggtgtgaagttaa 42207814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 42163552 - 42163517
Alignment:
Q  197 gacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    |||||||||||||||||||||||| |||||||||||    
T  42163552 gacttgtagtccgcacacttgaaggtgtgaagttaa 42163517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 23897565 - 23897618
Alignment:
Q  198 acttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||| ||||||| |||| ||||||||||| || ||||||| |||||||    
T  23897565 acttgtagtctgcacactagaaggtgtgaagttaaatatatatatatgattttt 23897618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 15754092 - 15753854
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||       |||||||| |||||| |||||||||||||||||||    
T  15754092 gagatttatgaaaaataaagatatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagttaacgttgacgatgtttttgcttataa 15753993  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15753992 catagcgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtggtccgcac 15753893  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15753892 acttgaagatgtgaagttaattagatatataagattttt 15753854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 21881986 - 21882224
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  21881986 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 21882085  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  21882086 cataacgctatatgtgatgagtgttaacgaggatcatggattaaaacatgaaatcaaactcgctttgtaaagtcaaactttttgaacttgtggtccgcac 21882185  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21882186 acttgaagatgtgaagttaattagatatataagattttt 21882224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 49488321 - 49488083
Alignment:
Q  13 gagatgtatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataa 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||       ||||||||||||||| |||||||||||||||||||    
T  49488321 gagatgtatgaaaaataaagagatctcaataaattatgtcatgaatggaatgaggtggaacaaaatttaaagtcaacgttgacgatgtttttgcttataa 49488222  T
Q  113 caaagcgctatatgtgatgagtgttaacgaggatcgtggattaaaacatgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcac 212  Q
    || ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  49488221 catagcgctatatgtgatgagtgttaacgaggatcaaggattaaaacatgatatcaaactcgctttgtaaagtcgaattttttggacttgtggtccgcac 49488122  T
Q  213 acttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49488121 acttgaagatgtgaagttaattagatatataagattttt 49488083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 20453277 - 20453522
Alignment:
Q  19 tatgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttgcttataacaaagc 118  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||        | ||||||||  || ||||||||||||||||||| | |||    
T  20453277 tatgaaaaagaaggagatctcgataaattatgtcatgaatggaatgaggtggaaccaaaatcaaagtcaatattgacgatgtttttgcttataatatagc 20453376  T
Q  119 gctatatgtgatgagtgttaacgaggatcgtggattaaaac-------------atgaaatcaaactcgctttgtaaagtcgaactttttggacttgtag 205  Q
    ||||||||||| |||    || |||| ||   ||| ||| |             ||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  20453377 gctatatgtgacgagatagaatgagggtcacagataaaatctattagacattatatgaaatcaaacttgctttctaaagccgaactttttggacttgtag 20453476  T
Q  206 tccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    || ||||||||||||||||||| ||||||||||||||| |||||||    
T  20453477 tctgcacacttgaagatgtgaaattaattagatatatatgattttt 20453522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 13925257 - 13925348
Alignment:
Q  159 catgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||| |||||||||  ||| |||||| ||||||||||| ||||||  ||||||||||||||||||||||| || |||||||    
T  13925257 catgaaatcaaactcgttttgtaaagctgaattttttg-acttgtagtccacacactcaaagatgtgaagttaattagatatgtatgattttt 13925348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 17031899 - 17031991
Alignment:
Q  160 atgaaatcaaactcgctttgtaaagtcgaactt-tttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||| ||| ||||||  ||| || |||||||||||| ||| ||||||||||| || |||||||| | ||||||||||||||||    
T  17031899 atgaaatcaaactcacttcgtaaagaagaatttgtttggacttgtattccacacacttgaaggtgcgaagttaaatggatatataagattttt 17031991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 44123214 - 44123129
Alignment:
Q  163 aaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||  |||  |||||||| |||||||||||   | ||||||||||||||||||||| || || |||||||    
T  44123214 aaatcaaactcgctttgtaaagctgaatcttttggacctgtagtccgca---tcgaagatgtgaagttaattagacatgtatgattttt 44123129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 13981924 - 13981885
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  13981924 tttggacttgtagtccgcacacttgaaggtgtgaagttaa 13981885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 10935910 - 10935983
Alignment:
Q  160 atgaaatcaaactcgctttgtaaagtcgaactt-tttggacttgtagtccgcacacttgaagatgtgaagttaa 232  Q
    |||||||||||||| |||  |||||| ||| || |||  ||||||||||||||||||||||| |||||||||||    
T  10935910 atgaaatcaaactcacttcataaagtagaatttgttttcacttgtagtccgcacacttgaaggtgtgaagttaa 10935983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 14462061 - 14461971
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14462061 tgaaatcaaactcgctttgtaaagctgaatttttcggacctgtagtccgcacacttgaagatgtgaagttaattagatatatatgattttt 14461971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 19442469 - 19442379
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    ||||||||||||||||||||||||   || ||||||||| |||||||| |||||| |||||||||||||||||||||||| || |||||||    
T  19442469 tgaaatcaaactcgctttgtaaagcttaattttttggacctgtagtcctcacactcgaagatgtgaagttaattagatatgtatgattttt 19442379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 6412853 - 6412794
Alignment:
Q  160 atgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaa 219  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6412853 atgaaatcaaactcgttttgtaaagtcaaactttttggacttgtagtccgcacacttgaa 6412794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 6413004 - 6412919
Alignment:
Q  20 atgaaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtggnnnnnnntttaaagtcaacgttaacgatgtttttg 105  Q
    |||||||| ||||||||||||| |||||| |||||||||| ||||||||||        | |||||||||||| ||||||||||||    
T  6413004 atgaaaaagaaagagatctcgaaaaattaagtcatgaatggaatgaggtggaaccaaaatgaaagtcaacgttgacgatgtttttg 6412919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 19818149 - 19818107
Alignment:
Q  24 aaaataaagagatctcgataaattatgtcatgaatgaaatgag 66  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  19818149 aaaataaagagatctcgataaattatgtcttgaatggaatgag 19818107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 6931917 - 6931974
Alignment:
Q  193 tttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagattttt 251  Q
    |||||||||||||||||||||||| ||| ||||||||||| | | |||||| |||||||    
T  6931917 tttggacttgtagtccgcacactt-aaggtgtgaagttaaatggctatatatgattttt 6931974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 19817960 - 19817895
Alignment:
Q  178 tgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatata 243  Q
    ||||||||  |||||||| |||| ||| |  |||||||||||| |||||||||||||| |||||||    
T  19817960 tgtaaagtaaaactttttagactcgtaatatgcacacttgaaggtgtgaagttaattatatatata 19817895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 23425590 - 23425655
Alignment:
Q  82 aagtcaacgttaacgatgtttttgcttataacaaagcgctatatgtgatgagtgttaacgaggatc 147  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||| |||| || |||||||||||    
T  23425590 aagtcaacgttgacgatatttttgcatataatatagcgctaaatgtaatgaatgataacgaggatc 23425655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 34267527 - 34267486
Alignment:
Q  25 aaataaagagatctcgataaattatgtcatgaatgaaatgag 66  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  34267527 aaattaagagatctcgagaagttatgtcatgaatgaaatgag 34267486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 18715 - 18804
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagatttt 250  Q
    ||||||||||||||||||||||||  | | ||||||||| ||||||||  ||||| ||||||||||||||||||||||||||| ||||||    
T  18715 tgaaatcaaactcgctttgtaaagctggattttttggacctgtagtccagacactcgaagatgtgaagttaattagatatatatgatttt 18804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 28883 - 28972
Alignment:
Q  161 tgaaatcaaactcgctttgtaaagtcgaactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatatataagatttt 250  Q
    ||||||||||||||||||||||||  | | ||||||||| ||||||||  ||||| ||||||||||||||||||||||||||| ||||||    
T  28883 tgaaatcaaactcgctttgtaaagctggattttttggacctgtagtccagacactcgaagatgtgaagttaattagatatatatgatttt 28972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 10790 - 10843
Alignment:
Q  188 aactttttggacttgtagtccgcacacttgaagatgtgaagttaattagatata 241  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10790 aactttttggacttgtagtccgcacacttgaagatgtgtagttaattagatata 10843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 10590 - 10637
Alignment:
Q  23 aaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtgg 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10590 aaaaataaagagatctcgataaattatgtcatgaatgaaatgaggtgg 10637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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