View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_64 (Length: 246)

Name: NF0648_low_64
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_64
NF0648_low_64
[»] scaffold0053 (1 HSPs)
scaffold0053 (17-246)||(27921-28150)
[»] chr2 (12 HSPs)
chr2 (10-244)||(21578088-21578323)
chr2 (113-225)||(29409678-29409791)
chr2 (77-245)||(21548188-21548356)
chr2 (76-245)||(25916491-25916661)
chr2 (179-246)||(27765602-27765669)
chr2 (76-243)||(24764395-24764562)
chr2 (76-246)||(22311476-22311647)
chr2 (186-245)||(28449478-28449537)
chr2 (183-245)||(27315779-27315841)
chr2 (184-244)||(16587098-16587158)
chr2 (181-213)||(17417459-17417491)
chr2 (184-228)||(25564009-25564053)
[»] chr5 (8 HSPs)
chr5 (112-243)||(24492361-24492493)
chr5 (184-231)||(26013777-26013824)
chr5 (183-245)||(6998922-6998984)
chr5 (153-246)||(30608224-30608317)
chr5 (197-246)||(37336672-37336721)
chr5 (184-244)||(16791264-16791324)
chr5 (188-246)||(22826178-22826236)
chr5 (188-244)||(18325440-18325496)
[»] chr3 (5 HSPs)
chr3 (76-244)||(27485845-27486018)
chr3 (184-246)||(13291691-13291753)
chr3 (76-246)||(46349011-46349182)
chr3 (184-245)||(17119059-17119120)
chr3 (184-244)||(10928999-10929059)
[»] chr4 (9 HSPs)
chr4 (76-246)||(18445974-18446145)
chr4 (76-229)||(22222599-22222753)
chr4 (184-234)||(11545261-11545311)
chr4 (188-245)||(11419751-11419808)
chr4 (189-234)||(11449398-11449443)
chr4 (183-243)||(21588309-21588369)
chr4 (184-235)||(12236272-12236323)
chr4 (188-245)||(19053251-19053308)
chr4 (184-244)||(23866052-23866112)
[»] chr8 (3 HSPs)
chr8 (123-245)||(27118593-27118715)
chr8 (184-246)||(23584916-23584978)
chr8 (184-245)||(28890332-28890393)
[»] chr6 (5 HSPs)
chr6 (77-242)||(18615125-18615290)
chr6 (184-245)||(4097768-4097829)
chr6 (157-234)||(10821179-10821256)
chr6 (194-246)||(10814797-10814849)
chr6 (184-235)||(19691925-19691976)
[»] chr7 (7 HSPs)
chr7 (148-244)||(1777038-1777134)
chr7 (76-245)||(22975319-22975489)
chr7 (184-246)||(12733632-12733694)
chr7 (188-234)||(26822372-26822418)
chr7 (204-245)||(10646799-10646840)
chr7 (184-241)||(27707324-27707381)
chr7 (194-234)||(32957647-32957687)
[»] chr1 (12 HSPs)
chr1 (76-245)||(22666304-22666474)
chr1 (114-244)||(15787701-15787832)
chr1 (159-234)||(17496619-17496696)
chr1 (184-234)||(26898107-26898157)
chr1 (114-244)||(12669028-12669158)
chr1 (184-234)||(17316399-17316449)
chr1 (76-233)||(19019025-19019181)
chr1 (146-231)||(30805804-30805890)
chr1 (204-246)||(22638357-22638399)
chr1 (186-244)||(37283329-37283387)
chr1 (184-233)||(21721139-21721188)
chr1 (184-228)||(12893277-12893321)
[»] scaffold1190 (1 HSPs)
scaffold1190 (184-244)||(1298-1358)
[»] scaffold0514 (1 HSPs)
scaffold0514 (184-244)||(7272-7332)
[»] scaffold0088 (1 HSPs)
scaffold0088 (203-246)||(42184-42227)


Alignment Details
Target: scaffold0053 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 28150 - 27921
Alignment:
Q  17 catcatcaaactatgtggagatcgtcaaattcagaagacttcatcaaactctgaaggtaccatcagacttggaagaccttcagacttcggaagaccatga 116  Q
    |||||| | ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  28150 catcattagactatgtagagatcatcaaactcagaagacttcatcaaactctgaaggtaccatcagacttggaagacctttagacttcagaagaccatga 28051  T
Q  117 gggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaaggatcttagttcagttttgtcttcatctgaccatgtgtagaaacatac 216  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||    
T  28050 gggactcaaactgcacgtcagatttattgtcttctatagttgtctctatcaaggatctgagttcagttttgtcttcatctgaccatgtatagaaacagac 27951  T
Q  217 aaagaacttcaaggacaataagaatgaacg 246  Q
    ||| ||||||||||||||||||||||||||    
T  27950 aaataacttcaaggacaataagaatgaacg 27921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 21578323 - 21578088
Alignment:
Q  10 agatggacatcatcaaactatgtggagatcgtcaaattcagaagacttcatcaaactctgaaggtaccatcagacttggaagaccttcagacttcggaag 109  Q
    |||| |||||||||| |||||||||||||| ||||| ||||||||| |   || | || ||||   |||||||||| |||||||||||||||||| ||||    
T  21578323 agattgacatcatcagactatgtggagatcatcaaaatcagaagacctagccagaatcagaagaccccatcagactcggaagaccttcagacttcagaag 21578224  T
Q  110 accatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaa-ggatcttagttcagttttgtcttcatctgaccatgtgtag 208  Q
    | | |||| |||  | ||| | | ||| |||| ||||||||||| ||  |||| ||||| |||||| ||| ||||||| ||||| |||||||| ||||||    
T  21578223 aacctgagagaccgagactccgcgtcatatttgttgtcttctattgtgttctccatcaaaggatctgagtacagttttttcttcgtctgaccacgtgtag 21578124  T
Q  209 aaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    ||||    ||||||||||||||||||||||||||||    
T  21578123 aaaccagaaaagaacttcaaggacaataagaatgaa 21578088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 29409791 - 29409678
Alignment:
Q  113 atgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatc-aaggatcttagttcagttttgtcttcatctgaccatgtgtagaaa 211  Q
    ||||||||| || ||| |||||||||||| | |||||||||||||||||| ||| |||||  | ||| ||||||||||||| |||||||| |||||||||    
T  29409791 atgagggacccagactccacatcagatttgtcgtcttctatagttgtctccatcaaaggaaatgagtacagttttgtcttcttctgaccacgtgtagaaa 29409692  T
Q  212 catacaaagaactt 225  Q
    |  |||||||||||    
T  29409691 cggacaaagaactt 29409678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 21548188 - 21548356
Alignment:
Q  77 catcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaaggatctta 176  Q
    |||||||||||||||| |||| | |||| ||||| | ||||||||  |  || ||  |||||||| ||||||||||||||| |||||||||||||||| |    
T  21548188 catcagacttggaagaacttccgtcttcagaagatcctgagggaccaaggctccatgtcagatttgttgtcttctatagttctctctatcaaggatctaa 21548287  T
Q  177 gttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    || ||||||| ||||  | | ||||  | |||||||| | |||  ||||||||||||||| ||||||||    
T  21548288 gtgcagttttttcttttttttaccacatatagaaacagataaaagacttcaaggacaatatgaatgaac 21548356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 25916491 - 25916661
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaa-ggatct 174  Q
    ||||| ||||||||||||||||| |||||  |||  | ||| |||| || ||| ||||| |||||| | ||||||| ||| ||||   | ||| ||||||    
T  25916491 ccatctgacttggaagaccttcatacttcataagcacttgaaggacccagactccacatgagatttgtcgtcttctgtagctgtccacaacaaaggatct 25916590  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
     ||  ||||||||||||| |||||||| |||||||||||   |||||||||||||| ||||||||||||||    
T  25916591 gagcacagttttgtcttcttctgaccacgtgtagaaacaagaaaagaacttcaagggcaataagaatgaac 25916661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 27765602 - 27765669
Alignment:
Q  179 tcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    |||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||   ||||||||||    
T  27765602 tcagatttgtcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacagagagaatgaacg 27765669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 24764395 - 24764562
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaa-ggatct 174  Q
    |||||||||||| |||||||||| |||||  |||  | |||||||| |||||| ||| |||||||| | ||||||| ||  ||||  |||||| |||| |    
T  24764395 ccatcagacttgaaagaccttcaaacttcataagcacctgagggacccaaactccacgtcagatttgtcgtcttctgtaactgtca-tatcaaaggattt 24764493  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatga 243  Q
     ||  | ||||||||||| ||||| ||  ||||||||||  ||||||||||||||  ||||||||||||    
T  24764494 gagcactgttttgtcttcttctgatcacatgtagaaacagtcaaagaacttcaagcgcaataagaatga 24764562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 22311476 - 22311647
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaagga-tct 174  Q
    ||||||||||||||||| |||||||||||  |||  | |||||||  || ||| |||||||||||| | ||||| ||||  ||||   ||||| || |||    
T  22311476 ccatcagacttggaagaacttcagacttcataagcacctgagggatccagactccacatcagatttgtcgtcttatatatatgtccacatcaaagaatct 22311575  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
     |   || |||||||||  | |||||| ||||||||| | |||||||||||||||| |||||| ||||||||    
T  22311576 gaacacaattttgtcttattttgaccacgtgtagaaaaagacaaagaacttcaagggcaataaaaatgaacg 22311647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 28449478 - 28449537
Alignment:
Q  186 tgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    ||||||| |||||||| ||||||||||  ||||||||||| ||||||||  |||||||||    
T  28449478 tgtcttcttctgaccacgtgtagaaaccaacaaagaacttaaaggacaaagagaatgaac 28449537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 27315841 - 27315779
Alignment:
Q  183 ttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    |||||||||| |||||||||||||||||| | |||||  ||||||  ||||| ||||||||||    
T  27315841 ttttgtcttcttctgaccatgtgtagaaatagacaaatgacttcatagacaagaagaatgaac 27315779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 16587098 - 16587158
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    ||||||||| ||||||||  |||| ||||| |||| |||||||||||||||  ||||||||    
T  16587098 tttgtcttcttctgaccacatgtacaaacaaacaatgaacttcaaggacaaagagaatgaa 16587158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 17417459 - 17417491
Alignment:
Q  181 agttttgtcttcatctgaccatgtgtagaaaca 213  Q
    ||||||||||||||||||||| |||||||||||    
T  17417459 agttttgtcttcatctgaccacgtgtagaaaca 17417491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 25564009 - 25564053
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaa 228  Q
    ||||||||| |||||||| ||||||||||| |||||||| |||||    
T  25564009 tttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaa 25564053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 24492361 - 24492493
Alignment:
Q  112 catgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatc-aaggatcttagttcagttttgtcttcatctgaccatgtgtagaa 210  Q
    |||||||||| |||||| ||||| |||||| ||||||||||||||||||||| || |||||| | |||  |||||||||||| ||| |||| ||||||||    
T  24492361 catgagggacacaaactccacattagatttgttgtcttctatagttgtctctgtcaaaggatatgagtatagttttgtcttcttctaaccacgtgtagaa 24492460  T
Q  211 acatacaaagaacttcaaggacaataagaatga 243  Q
    ||| ||||||||||| ||||||||  |||||||    
T  24492461 acagacaaagaacttaaaggacaaatagaatga 24492493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 26013824 - 26013777
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaagga 231  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  26013824 tttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaagga 26013777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 6998922 - 6998984
Alignment:
Q  183 ttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    |||||||||| |||||||| ||||||||||||| ||||||| | |||| ||||||||||||||    
T  6998922 ttttgtcttcttctgaccacgtgtagaaacatataaagaaccttaagggcaataagaatgaac 6998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 30608224 - 30608317
Alignment:
Q  153 tagttgtctctatcaaggatcttagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||| |||||||||||||||| ||| ||||||||| ||| |||||| |  ||||||||   ||||||||||||| ||||||  ||||||||||    
T  30608224 tagttatctctatcaaggatctgagtacagttttgttttcttctgacaacatgtagaaatggacaaagaacttcatggacaaagagaatgaacg 30608317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 37336721 - 37336672
Alignment:
Q  197 gaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||    
T  37336721 gaccacgtgtagaaacaaacaaagaacttcaaggacaaagagaatgaacg 37336672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 16791324 - 16791264
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    ||||||||  |||||||||||||||||||  |||| ||||||||||||||||  |||||||    
T  16791324 tttgtctttttctgaccatgtgtagaaacggacaatgaacttcaaggacaattggaatgaa 16791264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 22826236 - 22826178
Alignment:
Q  188 tcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||| |||||||| ||||||||||| ||||| || |||||||||||  ||||||||||    
T  22826236 tcttcttctgaccacgtgtagaaacaaacaaaaaaattcaaggacaaatagaatgaacg 22826178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 18325440 - 18325496
Alignment:
Q  188 tcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    ||||| |||| ||||||| ||||||| ||||||||||||| |||||||  |||||||    
T  18325440 tcttcgtctggccatgtgaagaaacaaacaaagaacttcagggacaattggaatgaa 18325496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 27485845 - 27486018
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatc------agatttattgtcttctatagttgtctctatcaag 169  Q
    |||||||||||| |||||||||||||||| ||||| | | ||| || || ||| ||| ||      |||||| | ||||| |||||||||||| || |||    
T  27485845 ccatcagacttgaaagaccttcagacttcagaagaacctaaggaacccagactccacgtctacgttagatttgtcgtcttgtatagttgtctccat-aag 27485943  T
Q  170 gatcttagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    ||| | ||| || |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  27485944 gatttgagtacaattttgtcttcttctgaccacgtgtagaaacagacaaagaacttcaaggacaataagaatgaa 27486018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 13291691 - 13291753
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||||||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||||||    
T  13291691 tttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatgaacg 13291753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 46349182 - 46349011
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaa-ggatct 174  Q
    ||||||| |||||||||||||||||||||  |||| | ||| ||||  | | | ||| ||| |||| |  ||||||||||||||||| ||||| ||| ||    
T  46349182 ccatcagtcttggaagaccttcagacttcataagaacctgaaggaccaagaatccacgtcaaatttgtcatcttctatagttgtctccatcaaaggacct 46349083  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
     ||| || |||||||||| | | | || ||||  ||||| |||||||||||||||  |||||||||||||||    
T  46349082 gagtacaattttgtcttcctataaacacgtgttaaaacagacaaagaacttcaagagcaataagaatgaacg 46349011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 17119120 - 17119059
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    ||||||||| ||||| || || |||||||| ||||||||||||||||||||  |||||||||    
T  17119120 tttgtcttcttctgatcacgtatagaaacaaacaaagaacttcaaggacaaagagaatgaac 17119059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 10929059 - 10928999
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    |||||| || |||||||||||||||||||| |||| |||||||||||| ||  ||||||||    
T  10929059 tttgtcctcttctgaccatgtgtagaaacaaacaaggaacttcaaggataaagagaatgaa 10928999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 18446145 - 18445974
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatc-aaggatct 174  Q
    |||||||||||||||||| |||||||||| ||||| | |||||||| ||   | ||| |||||||| | |||||||||||||||||| ||| |||||| |    
T  18446145 ccatcagacttggaagactttcagacttcagaagaacctgagggacccaggatccacgtcagatttgtcgtcttctatagttgtctccatcaaaggatat 18446046  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
     |||  |||||||||||| |||||  | |||||||||   ||||||||| | |||||||||||||| |||||    
T  18446045 gagtatagttttgtcttcttctgaaaacgtgtagaaatggacaaagaacgtgaaggacaataagaaggaacg 18445974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 22222599 - 22222753
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatc-aaggatct 174  Q
    ||||||||||| |||||||||||||||||  |||   |||||||||||| ||| ||| |||||||| ||||||| | ||||||||   ||| ||||||||    
T  22222599 ccatcagacttagaagaccttcagacttcataagcatatgagggactcagactccacgtcagatttgttgtcttttgtagttgtccacatcaaaggatct 22222698  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaag 229  Q
     ||  ||||||||||||| | || |||  |||||||| | |||||||||||||||    
T  22222699 gagcacagttttgtcttcttatgtccacatgtagaaatagacaaagaacttcaag 22222753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 11545311 - 11545261
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  11545311 tttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaa 11545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 11419808 - 11419751
Alignment:
Q  188 tcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||  |||||||||    
T  11419808 tcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacaaagagaatgaac 11419751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 11449398 - 11449443
Alignment:
Q  189 cttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||    
T  11449398 cttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaa 11449443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 21588309 - 21588369
Alignment:
Q  183 ttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatga 243  Q
    |||||||||| ||| ||||  |||||||||| ||||||||||| |||| ||||||||||||    
T  21588309 ttttgtcttcttctaaccacatgtagaaacagacaaagaactttaagggcaataagaatga 21588369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 12236323 - 12236272
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaat 235  Q
    |||||| || ||||| |||||| |||||||||| ||||||||||||||||||    
T  12236323 tttgtcctcttctgatcatgtgaagaaacatacgaagaacttcaaggacaat 12236272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 19053308 - 19053251
Alignment:
Q  188 tcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    ||||| |||||||| ||| ||||||| |||||||||||||||||| |  |||||||||    
T  19053308 tcttcttctgaccacgtgcagaaacaaacaaagaacttcaaggaccaagagaatgaac 19053251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 23866112 - 23866052
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    |||||| || ||||| |||||| | ||||| |||||||||||||||||||||  |||||||    
T  23866112 tttgtcctcttctgatcatgtgcataaacaaacaaagaacttcaaggacaattggaatgaa 23866052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 245
Target Start/End: Original strand, 27118593 - 27118715
Alignment:
Q  123 caaactgcacatcagatttattgtcttctatagttgtctctatcaaggatcttagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaa 222  Q
    |||||| ||| |||||||| ||||||| ||||||||||||||||||| |||| | | ||||||| ||||| | |||||  ||||||||||| | ||||||    
T  27118593 caaactccacgtcagatttgttgtcttttatagttgtctctatcaagaatctgaatgcagttttatcttcttttgaccgcgtgtagaaacagaaaaagaa 27118692  T
Q  223 cttcaaggacaataagaatgaac 245  Q
    ||||||  |||||||||||||||    
T  27118693 cttcaataacaataagaatgaac 27118715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 23584916 - 23584978
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||||||  |||||||| ||||| ||||| ||||||||||||||||||||  ||||||||||    
T  23584916 tttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaagagaatgaacg 23584978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 28890393 - 28890332
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    |||||| || |||||||||||||||||||| |||  |||||||||| ||||  |||||||||    
T  28890393 tttgtcctcttctgaccatgtgtagaaacaaacatggaacttcaagaacaaagagaatgaac 28890332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 18615125 - 18615290
Alignment:
Q  77 catcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaa-ggatctt 175  Q
    |||||||||||||||||||||||||||  |||||   |||||||| |||||| ||| || ||||  | ||||||||||||||||   ||||| ||||||     
T  18615125 catcagacttggaagaccttcagactttagaagaagctgagggacccaaactccacgtctgattg-tcgtcttctatagttgtccacatcaaaggatctg 18615223  T
Q  176 agttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatg 242  Q
    ||   |||||||||||| | ||||||  ||||||||||||||||||||||||||| ||||| |||||    
T  18615224 agcatagttttgtcttcttttgaccacatgtagaaacatacaaagaacttcaagggcaataggaatg 18615290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 4097768 - 4097829
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    ||||| ||||||||||||  |||||||| | ||||||||||||||||||||  |||||||||    
T  4097768 tttgtgttcatctgaccacatgtagaaataaacaaagaacttcaaggacaaagagaatgaac 4097829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 10821256 - 10821179
Alignment:
Q  157 tgtctctatcaaggatcttagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    |||||||||||||||||| ||| || |||| ||||| |||||||| ||||||||||  | |||| |||| ||||||||    
T  10821256 tgtctctatcaaggatctgagtacaattttatcttcttctgaccacgtgtagaaacggaaaaaggactttaaggacaa 10821179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 10814797 - 10814849
Alignment:
Q  194 tctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    |||||||| ||||||||||| ||||||||||| ||||||||  ||||||||||    
T  10814797 tctgaccacgtgtagaaacaaacaaagaacttaaaggacaaagagaatgaacg 10814849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 19691925 - 19691976
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaat 235  Q
    |||||| || |||||| ||||||||||||| ||||||| |||||||||||||    
T  19691925 tttgtcctcttctgactatgtgtagaaacaaacaaagagcttcaaggacaat 19691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 1777038 - 1777134
Alignment:
Q  148 ttctatagttgtctctatcaaggatcttagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    |||||||| |||||||||||||||||| ||| || |||||||||| |||||||| ||||| | ||| ||||||||||||||||||||  ||||||||    
T  1777038 ttctatagatgtctctatcaaggatctaagtacaattttgtcttcttctgaccacgtgtaaacacagacaaagaacttcaaggacaaagagaatgaa 1777134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 245
Target Start/End: Complemental strand, 22975489 - 22975319
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatc-aaggatct 174  Q
    |||||| | |||||||||||||| || || ||||| | ||||||||||| ||| ||| |||||||| | ||||||||||| ||||   ||| || |||||    
T  22975489 ccatcaaatttggaagaccttcaaacctcagaagaacctgagggactcagactccacgtcagatttttcgtcttctatagctgtccacatcaaatgatct 22975390  T
Q  175 tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
     ||    ||||| ||||| ||| ||||  |||||||||| |||||||| ||||||| ||||||||||||||    
T  22975389 aagcattgttttatcttcttctaaccacatgtagaaacagacaaagaatttcaagggcaataagaatgaac 22975319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 12733694 - 12733632
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||||||| |||||  || || ||| ||| |||||||||||||||||||| |||||||||||    
T  12733694 tttgtcttcttctgattatttgcagatacaaacaaagaacttcaaggacaaaaagaatgaacg 12733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 26822418 - 26822372
Alignment:
Q  188 tcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    ||||| ||| || ||||||||||||| ||||||||||||||||||||    
T  26822418 tcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaa 26822372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 10646799 - 10646840
Alignment:
Q  204 tgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  10646799 tgtagaaacaaacaaagaacttcaaggacaaagagaatgaac 10646840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 27707324 - 27707381
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaat 241  Q
    |||||| || ||||||||  |||||||||| |||||||||||||| ||||| ||||||    
T  27707324 tttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaaaagaat 27707381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 32957687 - 32957647
Alignment:
Q  194 tctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  32957687 tctgaccacatgtagaaacaaacaaagaacttcaaggacaa 32957647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 245
Target Start/End: Complemental strand, 22666474 - 22666304
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaaggatct- 174  Q
    |||| ||||||||||||||| |||||| | ||||| | |||||||| || ||| |||||  ||||  | ||| ||| ||||||| ||||||||| || |     
T  22666474 ccataagacttggaagacctccagact-cagaagatcttgagggacccagactccacattggattcgtcgtcatctgtagttgtttctatcaagcatatg 22666376  T
Q  175 -tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaac 245  Q
     |||| || |||||||||| ||| |||| ||||||||||  ||||||||||||||||||||  |||||||||    
T  22666375 atagtacaattttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatgaac 22666304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 15787701 - 15787832
Alignment:
Q  114 tgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaa-ggatcttagttcagttttgtcttcatctgaccatgtgtagaaac 212  Q
    |||||||| || ||| ||| |||||||| | ||||||||||| | |||| ||||| |||||| |||  | |||||||||| ||||| || ||||||||||    
T  15787701 tgagggacccatactccacgtcagatttgtcgtcttctatagctatctccatcaaaggatctgagtataattttgtcttcttctgatcacgtgtagaaac 15787800  T
Q  213 atacaaagaacttcaaggacaataagaatgaa 244  Q
    | | |||| |||||||||||||  ||||||||    
T  15787801 aaataaaggacttcaaggacaaagagaatgaa 15787832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 17496619 - 17496696
Alignment:
Q  159 tctctatcaaggatct--tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    ||||||||||||||||  |||  || |||||||||| ||||||||  ||||||||||||||||||| |||||||||||    
T  17496619 tctctatcaaggatctaatagcacaattttgtcttcttctgaccacatgtagaaacatacaaagaaattcaaggacaa 17496696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 26898157 - 26898107
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    ||||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  26898157 tttgtcttcttctgaccacgtgtagaaacatacaaagaactgcaaggacaa 26898107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 12669028 - 12669158
Alignment:
Q  114 tgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaaggatcttagttcagttttgtcttcatctgaccatgtgtagaaaca 213  Q
    ||||||||||| ||| ||| |||||||| |   ||| ||||| | ||||| |||||||||| | |  | |||||||||| ||||||||  || | |||||    
T  12669028 tgagggactcagactccacgtcagatttttcaacttttatagctctctctgtcaaggatctgaatataattttgtcttcttctgaccacatgcaaaaaca 12669127  T
Q  214 tacaaagaacttcaaggacaataagaatgaa 244  Q
     ||||||||||||||||||||  ||||||||    
T  12669128 gacaaagaacttcaaggacaaagagaatgaa 12669158  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 17316399 - 17316449
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaa 234  Q
    ||||||||| |||||||||||||||||||| |||| |||||| ||||||||    
T  17316399 tttgtcttcttctgaccatgtgtagaaacaaacaaggaactttaaggacaa 17316449  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 19019025 - 19019181
Alignment:
Q  76 ccatcagacttggaagaccttcagacttcggaagaccatgagggactcaaactgcacatcagatttattgtcttctatagttgtctctatcaaggatctt 175  Q
    |||||||||||||||||||  || ||| | | ||| | |||| ||| |||||| ||| |||||||| | ||||| |||||  ||||||||||||||| |     
T  19019025 ccatcagacttggaagacccacaaact-cagcagatcctgagagacccaaactccacgtcagatttgtcgtcttttatagcagtctctatcaaggatatg 19019123  T
Q  176 agttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggaca 233  Q
    ||  || ||||||||||  |||||||  | |||||| | | |||||||||||||||||    
T  19019124 agcacaattttgtcttctcctgaccacatatagaaatagataaagaacttcaaggaca 19019181  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 30805804 - 30805890
Alignment:
Q  146 tcttctatagttgtctctatcaaggatct--tagttcagttttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaagga 231  Q
    |||||||||||||||||||||||   |||  |||| || ||| |||||| |||| ||| ||||||||||| |||||||||||||||||    
T  30805804 tcttctatagttgtctctatcaatactctgatagtacaattt-gtcttcttctggccacgtgtagaaacaaacaaagaacttcaagga 30805890  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 22638399 - 22638357
Alignment:
Q  204 tgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    |||||||||| ||||| |||||||||| |||||||||||||||    
T  22638399 tgtagaaacagacaaataacttcaagggcaataagaatgaacg 22638357  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 37283329 - 37283387
Alignment:
Q  186 tgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    ||||||| |||||||| ||||||||||| |||||  ||||||| | |||||||||||||    
T  37283329 tgtcttcttctgaccacgtgtagaaacagacaaatgacttcaaaggcaataagaatgaa 37283387  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 21721139 - 21721188
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggaca 233  Q
    ||||||||| ||||| |||||||| | ||| |||||||||||||||||||    
T  21721139 tttgtcttcttctgatcatgtgtaaatacaaacaaagaacttcaaggaca 21721188  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 12893277 - 12893321
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaa 228  Q
    ||||||||| ||| |||| ||||||||||| ||||||||||||||    
T  12893277 tttgtcttcttctaaccacgtgtagaaacaaacaaagaacttcaa 12893321  T

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Target: scaffold1190 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 1358 - 1298
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    |||||| || |||||||| ||| ||||||| |||||||||||||||||||||  |||||||    
T  1358 tttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaa 1298  T

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Target: scaffold0514 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 7332 - 7272
Alignment:
Q  184 tttgtcttcatctgaccatgtgtagaaacatacaaagaacttcaaggacaataagaatgaa 244  Q
    |||||| || |||||||| ||| ||||||| |||||||||||||||||||||  |||||||    
T  7332 tttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaa 7272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 42184 - 42227
Alignment:
Q  203 gtgtagaaacatacaaagaacttcaaggacaataagaatgaacg 246  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||    
T  42184 gtgtagaaacaaacaaagaacttcaaggacaaaaagaaagaacg 42227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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