View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_65 (Length: 244)
Name: NF0648_low_65
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_65 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 30047637 - 30047420
Alignment:
| Q |
1 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30047637 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
30047538 |
T |
|
| Q |
101 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30047537 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
30047438 |
T |
|
| Q |
201 |
gaaactccattttgctga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30047437 |
gaaactccattttgctga |
30047420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7159994 - 7159777
Alignment:
| Q |
1 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
7159994 |
caaagatcttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttctcttgaacagctcttgttggtagcctattcaagagata |
7159895 |
T |
|
| Q |
101 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
7159894 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataacttttctgtgtttcctctca |
7159795 |
T |
|
| Q |
201 |
gaaactccattttgctga |
218 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
7159794 |
gaaactccattttactga |
7159777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 26765837 - 26765767
Alignment:
| Q |
57 |
gttttcccttgaacagcccttgttggcagcctattcaagagatacactgctgtataaacagcttcagccca |
127 |
Q |
| |
|
||||| |||||||||||| |||| || |||||||| || ||| |||| ||||||| | ||||||||||||| |
|
|
| T |
26765837 |
gtttttccttgaacagcctttgtaggaagcctatttaatagaaacacggctgtattagcagcttcagccca |
26765767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 198378 - 198595
Alignment:
| Q |
1 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198378 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
198477 |
T |
|
| Q |
101 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198478 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
198577 |
T |
|
| Q |
201 |
gaaactccattttgctga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
198578 |
gaaactccattttgctga |
198595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3943891 - 3943674
Alignment:
| Q |
1 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943891 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
3943792 |
T |
|
| Q |
101 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943791 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
3943692 |
T |
|
| Q |
201 |
gaaactccattttgctga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3943691 |
gaaactccattttgctga |
3943674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22363519 - 22363302
Alignment:
| Q |
1 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
100 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363519 |
caaagatcttcaaatgtttggcagaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
22363420 |
T |
|
| Q |
101 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363419 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
22363320 |
T |
|
| Q |
201 |
gaaactccattttgctga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22363319 |
gaaactccattttgctga |
22363302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 26710695 - 26710765
Alignment:
| Q |
57 |
gttttcccttgaacagcccttgttggcagcctattcaagagatacactgctgtataaacagcttcagccca |
127 |
Q |
| |
|
||||| |||||||||||| |||| || |||||||| || ||| |||| ||||||| | ||||||||||||| |
|
|
| T |
26710695 |
gtttttccttgaacagcctttgtaggaagcctatttaatagaaacacggctgtattagcagcttcagccca |
26710765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 39951539 - 39951754
Alignment:
| Q |
1 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951539 |
caaagaccttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagata |
39951638 |
T |
|
| Q |
101 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951639 |
cactgctgtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctc- |
39951737 |
T |
|
| Q |
201 |
gaaactccattttgctga |
218 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39951738 |
-aaactccattttgctga |
39951754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 26220279 - 26220484
Alignment:
| Q |
8 |
cttcaaatgtttggctgaaggcttcacacctatccatgcctcaattggtgttttcccttgaacagcccttgttggcagcctattcaagagatacactgct |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||||||| ||||| | |
|
|
| T |
26220279 |
cttcaaatgtttggttgaaggcttcacacctatccatgcctcaattgctgttttctcttga-caacccttgttggcagcttattcaagagatgcactgtt |
26220377 |
T |
|
| Q |
108 |
gtataaacagcttcagcccaaaagctttttggtaattgcttttcagcaatcaaacatcttgccatctccataactgttctgtttttcctctcagaaactc |
207 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||| |||||| ||||||||||| || || ||||| ||||||| |
|
|
| T |
26220378 |
gtataaacagcttcagtccaaaaagtttttggtaattgcttttcaacaattaaacatcttgtcatctctataactgttctattatttctctcggaaactc |
26220477 |
T |
|
| Q |
208 |
cattttg |
214 |
Q |
| |
|
||||||| |
|
|
| T |
26220478 |
cattttg |
26220484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 35928617 - 35928687
Alignment:
| Q |
57 |
gttttcccttgaacagcccttgttggcagcctattcaagagatacactgctgtataaacagcttcagccca |
127 |
Q |
| |
|
||||| |||||||||||| |||| || |||||||| || ||| |||| ||||||| | ||||||||||||| |
|
|
| T |
35928617 |
gtttttccttgaacagcctttgtaggaagcctatttaatagaaacacggctgtattagcagcttcagccca |
35928687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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