View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_66 (Length: 242)
Name: NF0648_low_66
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_66 |
 | |
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| [»] chr6 (4 HSPs) |
| |
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| [»] scaffold0040 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0028 (2 HSPs) |
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| [»] chr5 (10 HSPs) |
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| [»] chr4 (9 HSPs) |
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| [»] scaffold0482 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (9 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0233 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 23896325 - 23896088
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23896325 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
23896226 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23896225 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacaactatcaaaaacgtgtccaacagctctattttct |
23896126 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23896125 |
cccttgatcaccaagacactcctcacctataaatacaa |
23896088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 18420031 - 18420268
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
18420031 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
18420130 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420131 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
18420230 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18420231 |
cccttggtcaccaagacactcctcacctataaatacaa |
18420268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 14101770 - 14101907
Alignment:
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
14101770 |
agaacattctgagaacgttcttcccgttttaatgaagaaaagtgaaatcaattgaagctttggacagctgccaaaaacgtatccaacaactctattttca |
14101869 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14101870 |
ctcttgatcaccaaggcactcctcacctataaatacaa |
14101907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 12173040 - 12173144
Alignment:
| Q |
136 |
aagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacactcctcacctata |
235 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| | |||| ||||| ||| |||||| |||||||||| || |||||||| ||||||| || ||||| |
|
|
| T |
12173040 |
aagaagaaaagtgaaatcaattgaaactttggatatctat-aaaaatgtgcccaacaactctattttcatagtttatcaccaacacactccacatctata |
12173138 |
T |
|
| Q |
236 |
aataca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
12173139 |
aataca |
12173144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 31516 - 31279
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31516 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
31417 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31416 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
31317 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31316 |
cccttgttcaccaagacactcctcacctataaatacaa |
31279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 9559 - 9762
Alignment:
| Q |
38 |
ctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaa |
137 |
Q |
| |
|
||||||| |||||||| | ||| ||||||||| ||||||| || ||||| |||||||||||| ||||||||||||||||||||| |||||||| || |
|
|
| T |
9559 |
ctcattatagctggttctttcactcgcaagcaa-gcaacagagcaagcaaagctaggcaaatcagacagaacattctgagaacgttctagctatttttaa |
9657 |
T |
|
| Q |
138 |
gaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacactcctcacctataaa |
237 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
9658 |
gaagaaaagtgaaaacaaatgagactttggacagctatcaaaaatgtgtccatcaactctattttcacccttgatcaccaagacactcctcacctatata |
9757 |
T |
|
| Q |
238 |
tacaa |
242 |
Q |
| |
|
||||| |
|
|
| T |
9758 |
tacaa |
9762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 15172798 - 15173035
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15172798 |
gacatcatcagaagtgagcagcaagttatacagctcattatagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
15172897 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172898 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
15172997 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172998 |
cccttgatcaccaagacactcctcacctataaatacaa |
15173035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 7592485 - 7592722
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7592485 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
7592584 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592585 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
7592684 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7592685 |
cccttggtcaccaagacactcctcacctataaatacaa |
7592722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 4119133 - 4118896
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4119133 |
gacatcatcagaagtgagcaacaagttatacagctcattaaagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa |
4119034 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4119033 |
agaacattctgagaacgttttggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
4118934 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4118933 |
cccttgatcaccaagacactcctcacctataaatacaa |
4118896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 15202224 - 15202461
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
15202224 |
gacatcatcagaagtgggcagcaagttatacaactcattacagctggttatctcatgcgcaagcaaagcaacagtgcttttaaagccagacaaatcagaa |
15202323 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15202324 |
agaacattcatagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttct |
15202423 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15202424 |
cccttgatcaccaagacactcctcacctataaatacaa |
15202461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 95140 - 94903
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
95140 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
95041 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95040 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
94941 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
94940 |
cccttggtcaccaagacactcctcacctataaatacaa |
94903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 104581 - 104344
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
104581 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
104482 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104481 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
104382 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
104381 |
cccttggtcaccaagacactcctcacctataaatacaa |
104344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 24412307 - 24412544
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24412307 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
24412406 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412407 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
24412506 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24412507 |
cccttggtcaccaagacactcctcacctataaatacaa |
24412544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 30445538 - 30445301
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445538 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
30445439 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445438 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
30445339 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30445338 |
cccttggtcaccaagacactcctcacctataaatacaa |
30445301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 30454910 - 30454673
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454910 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
30454811 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454810 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
30454711 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30454710 |
cccttggtcaccaagacactcctcacctataaatacaa |
30454673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 30459968 - 30459731
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459968 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
30459869 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459868 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
30459769 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30459768 |
cccttggtcaccaagacactcctcacctataaatacaa |
30459731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 18568517 - 18568754
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568517 |
gacatcatcagaagtggactgcaagttacacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
18568616 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568617 |
agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
18568716 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18568717 |
cccttggtcaccaagacactcctcacctataaatacaa |
18568754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 22488666 - 22488902
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
22488666 |
gacatcatcagcattaggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaa-gcaacagtgctttcaaagccaggcaaatcagaa |
22488764 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22488765 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
22488864 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22488865 |
cccttgatcaccaagacactcctcacctataaatacaa |
22488902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 24421767 - 24421993
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24421767 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
24421866 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24421867 |
agaacattct-----------ggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccagcagctctattttct |
24421955 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24421956 |
cccttggtcaccaagacactcctcacctataaatacaa |
24421993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 4635442 - 4635678
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||| ||||||||| |||||| ||||| |||||||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
4635442 |
gacatcatcagcagtgcgcaacaagttatacaactcattacaactggttctctcacgcgcaagcaa-gcaatagtgctttcaaagccaggcaaatcagaa |
4635540 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
4635541 |
agaacattttgagaacattctagctattttaaagaagaaaagaaaaatcaattgagactttggacaactatcaaaaacgcatccaacagctctattttct |
4635640 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4635641 |
cccttgatcaccaagacactcctcacctataaatacaa |
4635678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 24278987 - 24278813
Alignment:
| Q |
34 |
acagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctattt |
133 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||| |||||| ||| |||||| |||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
24278987 |
acagttcattacaactggtactctcatgcacaagcaa-gcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tgagaacgttctggctattt |
24278890 |
T |
|
| Q |
134 |
t-aaagaagaaaagagaaatcaattgagactttggacagctatca-aaaacgtgtccaacagctctattttctccct |
208 |
Q |
| |
|
| ||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
24278889 |
ttaaagaagaagagagaaatcaactgagattttggacagctatcaaaaaacgtgtccaacaactctattttctccct |
24278813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 24383227 - 24383401
Alignment:
| Q |
34 |
acagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctattt |
133 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||| |||||| ||| |||||| |||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
24383227 |
acagttcattacaactggtactctcatgcacaagcaa-gcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tgagaacgttctggctattt |
24383324 |
T |
|
| Q |
134 |
t-aaagaagaaaagagaaatcaattgagactttggacagctatc-aaaaacgtgtccaacagctctattttctccct |
208 |
Q |
| |
|
| ||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
24383325 |
ttaaagaagaagagagaaatcaactgagattttggacagctatcaaaaaacgtgtccaacaactctattttctccct |
24383401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 3242996 - 3242759
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3242996 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
3242897 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242896 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
3242797 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3242796 |
cccttggtcaccaagacactcctcacctataaatacaa |
3242759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 3917545 - 3917782
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3917545 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
3917644 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917645 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
3917744 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3917745 |
cccttggtcaccaagacactcctcacctataaatacaa |
3917782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 26811987 - 26812224
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26811987 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
26812086 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812087 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
26812186 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26812187 |
cccttggtcaccaagacactcctcacctataaatacaa |
26812224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 26821454 - 26821691
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26821454 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
26821553 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821554 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
26821653 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26821654 |
cccttggtcaccaagacactcctcacctataaatacaa |
26821691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 54690622 - 54690385
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54690622 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
54690523 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54690522 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
54690423 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54690422 |
cccttggtcaccaagacactcctcacctataaatacaa |
54690385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 54700053 - 54699816
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54700053 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
54699954 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54699953 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
54699854 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54699853 |
cccttggtcaccaagacactcctcacctataaatacaa |
54699816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 37058566 - 37058803
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
37058566 |
gacatcatcagaagtgggcacaaagttatacagctcattacagctggttatctcatgcgcaagcaaaacaacagtgctttcaaagccaggcaaatcagaa |
37058665 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37058666 |
agaacattttgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttct |
37058765 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058766 |
cccttgatcaccaagacactcctcacctataaatacaa |
37058803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 15843605 - 15843369
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15843605 |
gacatcatcagcattgggcagcaaattatacagctcattacagctggttatctcatgcgcaagcaa-gcaacagtgctttcaaagccaggcaaatcagaa |
15843507 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15843506 |
agaacattatgagaacgttatggctattttaaagaagaaaagagaaatcaattgagactttgaacagctataaaaaacgtgtccaacagctctattttct |
15843407 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15843406 |
cccttgatcaccaagacactcctcacctataaatacaa |
15843369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 18125981 - 18125876
Alignment:
| Q |
136 |
aagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacactcctcacctata |
235 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||| |||||| |||||||||| |||| ||||| | ||||||||| ||| |||||| || |||| |
|
|
| T |
18125981 |
aagaagaaaagtgaaaccaattgaagctttggacagctg-caaaaatgtgtccaacaactcttttttcacacttgatcactaagtcactccacatatata |
18125883 |
T |
|
| Q |
236 |
aatacaa |
242 |
Q |
| |
|
||||||| |
|
|
| T |
18125882 |
aatacaa |
18125876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 3012 - 3249
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3012 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
3111 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3112 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatcaaaaacgtgtccaacagctctattttct |
3211 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3212 |
cccttggtcaccaagacactcctcacctataaatacaa |
3249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 7789787 - 7789550
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789787 |
gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
7789688 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789687 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatcaaaaacgtgtccaacagctctattttct |
7789588 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7789587 |
cccttggtcaccaagacactcctcacctataaatacaa |
7789550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 28352430 - 28352193
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28352430 |
gacatcatcagaagtgggctgcaagttatacaactcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28352331 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352330 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28352231 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28352230 |
cccttggtcaccaagacactcctcacctataaatacaa |
28352193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 28368362 - 28368126
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28368362 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28368263 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368262 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28368163 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28368162 |
cccttggt-accaagacactcctcacctataaatacaa |
28368126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 28376180 - 28375944
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28376180 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28376081 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28376080 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28375981 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28375980 |
cccttggt-accaagacactcctcacctataaatacaa |
28375944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 28384002 - 28383766
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28384002 |
gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa |
28383903 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383902 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
28383803 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28383802 |
cccttggt-accaagacactcctcacctataaatacaa |
28383766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 38529846 - 38529609
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
|||||||||| | |||||| ||||||| ||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
38529846 |
gacatcatcaacattgggcaacaagttaaacaactcattacagctggttctctcacgcgcaagcaa-gcaacagtgctttcaaagtcagacaattcagaa |
38529748 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaaga-gaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
38529747 |
agaacattctgagaacggtctggctattttaaagaagaaaaaaagaaatcaattgagactttggacaactataaaaaacgtgtccaacaactctattttc |
38529648 |
T |
|
| Q |
204 |
tcccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38529647 |
tcccttgatcaccaagacactcctcgcctataaatacaa |
38529609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 4951164 - 4951312
Alignment:
| Q |
94 |
gcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacag |
193 |
Q |
| |
|
|||||||||| | |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4951164 |
gcaaatcagacataacattatgagaacgttcttcctatttttaagaagaaaagagaaatcaattgagactttagacagttatcaaaaacgtgtccaacaa |
4951263 |
T |
|
| Q |
194 |
ctctattttctcccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4951264 |
ctctagtttctcccttgatcaccaagacactcctcacctataaatacaa |
4951312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 7784764 - 7784628
Alignment:
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||||||||||| |||||||||||| ||||||| |||| ||||||| ||||||||| | |||||||| |
|
|
| T |
7784764 |
agaacattctaagaacattctgtctgttt-aaagaagaaaagtgaaatcaattgaagctttggaaagctgccaaaaacatgtccaacaacactattttca |
7784666 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
| ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
7784665 |
ctcttgatcaccaaggcactgctcacctataaatacaa |
7784628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 27168983 - 27169089
Alignment:
| Q |
136 |
aagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacactcctcacctata |
235 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||| |||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
27168983 |
aagaagaaaagtgaaatcaattgaatcgttggacagctgcactaaacgtgtccaacacctctattttcactcttgatcaccaagtcactcctcacctata |
27169082 |
T |
|
| Q |
236 |
aatacaa |
242 |
Q |
| |
|
|| |||| |
|
|
| T |
27169083 |
aacacaa |
27169089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 4362085 - 4361980
Alignment:
| Q |
136 |
aagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacactcctcacctata |
235 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||| |||||| |||||||||| |||| ||||| | ||||||||| ||| |||||| || |||| |
|
|
| T |
4362085 |
aagaagaaaagtgaaaccaattgaagctttggacagctg-caaaaatgtgtccaacaactcttttttcacacttgatcactaagtcactccacatatata |
4361987 |
T |
|
| Q |
236 |
aatacaa |
242 |
Q |
| |
|
||||||| |
|
|
| T |
4361986 |
aatacaa |
4361980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 412777 - 413014
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
412777 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaatagtgctttcaaagtcagacaaatcagaa |
412876 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
412877 |
agaacattatgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaaagagtccaacaactctattttct |
412976 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
412977 |
cccttgatcaccaagacactcctcacctataaatacaa |
413014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 26812 - 26576
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
26812 |
gacatcatcagcattgggcagcaagttatacagctcattacagctgattaactcatgcgcatacaa-gcaacagtgctttcaaagccagacaaatcagaa |
26714 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
26713 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaaaaatgtgtccaacatctctattttct |
26614 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26613 |
cccttgatcaccaagacactcctcacctataaatacaa |
26576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 24023445 - 24023213
Alignment:
| Q |
9 |
tcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaa |
108 |
Q |
| |
|
||||||||| || || ||||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
24023445 |
tcatcagaattgagcgacaagttaaacagctcattacagttggttctctcacgcgcaag-aaagcaacagtgctttcaaagtaaggcaattcagacagaa |
24023347 |
T |
|
| Q |
109 |
cattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttctccct |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24023346 |
cattctaagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaaaaacgtgtccaacaactctattttctccct |
24023247 |
T |
|
| Q |
209 |
tgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
24023246 |
tgatcactaagacactcctcacctataaatacaa |
24023213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 31711162 - 31710937
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
31711162 |
gacatcatcagcattgggcaacaagttatacagctcattacaactggttctctcacgcgcaagcaa-gcaacagtgctttcaaagccaggaaaatcagaa |
31711064 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |
|
|
| T |
31711063 |
agaacattctg-----------gctatttttaagaagaaaagagaaatcaattgagactttggacaactatcaaaaacgcgtccaacaactctattttct |
31710975 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31710974 |
cacttgatcaccaagacactcctcacctataaatacaa |
31710937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 14272600 - 14272772
Alignment:
| Q |
70 |
aagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggac |
169 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
14272600 |
aagcaacaatgctttcaaagttaggcaattcagacagaacattctgaaaacgttctggctatttataagtagaaaagagaaatcaattgagactttggac |
14272699 |
T |
|
| Q |
170 |
agctatcaaaaacgtgtccaacagctctattttctcccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14272700 |
agctatcaaaaacgtgtccaacaactctattttctcccttgatcaccaagacactcctcacctataaatacaa |
14272772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 15810688 - 15810452
Alignment:
| Q |
5 |
gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa |
104 |
Q |
| |
|
||||| ||||||| || ||| ||||| | |||||||||||||||||||| ||||| ||||||||| |||||||||| |||||| | |||||||||| |
|
|
| T |
15810688 |
gacataatcagaattgagcaacaagtaaaacagctcattacagctggttctctcactcgcaagcaa-gcaacagtgcaagcaaagttatgcaaatcagac |
15810590 |
T |
|
| Q |
105 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
204 |
Q |
| |
|
| |||||||||||| | ||||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
15810589 |
ataacattctgagatcattctgtctatttttaagaagaaaaatgaaatcaattaggactttggacagctatcaaaaatgtgtccaacaactctatttgca |
15810490 |
T |
|
| Q |
205 |
cccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
15810489 |
ccattgatcaccaagacactcatcacctataaatacaa |
15810452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 41001003 - 41000849
Alignment:
| Q |
91 |
caggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaa---cgtgtc |
187 |
Q |
| |
|
||||||||||||| | |||||||||||| | ||||| | | ||| ||||||||||| |||||||| |||||||||||||| |||| ||||| |||||| |
|
|
| T |
41001003 |
caggcaaatcagacataacattctgagatctttctgcccaattttaagaagaaaagtgaaatcaaatgagactttggacatctataaaaaaaaacgtgtc |
41000904 |
T |
|
| Q |
188 |
caacagctctattttctcccttgatcaccaagacactcctcacctataaatacaa |
242 |
Q |
| |
|
||||| |||||||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41000903 |
caacatctctattttcactcttgatcaccaaggcactcctcacctataaatacaa |
41000849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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