View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_67 (Length: 241)
Name: NF0648_low_67
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30047613 - 30047830
Alignment:
| Q |
1 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30047613 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggatttttt |
30047712 |
T |
|
| Q |
101 |
ngggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30047713 |
tgggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
30047812 |
T |
|
| Q |
201 |
ggattgggaaaatgatga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30047813 |
ggattgggaaaatgatga |
30047830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7159970 - 7160187
Alignment:
| Q |
1 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnn |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7159970 |
tcagccaaacatttgaagatctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgacaaagctgaaatggggatttttt |
7160069 |
T |
|
| Q |
101 |
ngggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7160070 |
tgggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcaacagagacattgatgttgatgaaaatgcatattg |
7160169 |
T |
|
| Q |
201 |
ggattgggaaaatgatga |
218 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
7160170 |
ggattggaaaaatgatga |
7160187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 198402 - 198185
Alignment:
| Q |
1 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
198402 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggatttttt |
198303 |
T |
|
| Q |
101 |
ngggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
198302 |
tgggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
198203 |
T |
|
| Q |
201 |
ggattgggaaaatgatga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
198202 |
ggattgggaaaatgatga |
198185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3943867 - 3944084
Alignment:
| Q |
1 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3943867 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggatttttt |
3943966 |
T |
|
| Q |
101 |
ngggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943967 |
tgggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
3944066 |
T |
|
| Q |
201 |
ggattgggaaaatgatga |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3944067 |
ggattgggaaaatgatga |
3944084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 39951563 - 39951346
Alignment:
| Q |
1 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39951563 |
tcagccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgacaaagctgaaatggggatttttt |
39951464 |
T |
|
| Q |
101 |
ngggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951463 |
tgggttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattg |
39951364 |
T |
|
| Q |
201 |
ggattgggaaaatgatga |
218 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
39951363 |
ggattgggaaaattatga |
39951346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 26220292 - 26220080
Alignment:
| Q |
5 |
ccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnnnggg |
104 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| || ||| |
|
|
| T |
26220292 |
ccaaacatttgaagatatttggattaatatgttatgttcatgttgtagcagcaaaaagatccaaaatggatgacaatgctgaaatggtgattcttttggg |
26220193 |
T |
|
| Q |
105 |
ttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggat |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
26220192 |
ctatgcagcaagctccaa-ggttatagagtgtacaacttgaagaccaaacatattgtgatcagcagagatattaatgttgatgaaaatgcatattcggat |
26220094 |
T |
|
| Q |
205 |
tgggaaaatgatga |
218 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
26220093 |
tgagaaaatgatga |
26220080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 22363498 - 22363712
Alignment:
| Q |
4 |
gccaaacatttgaaggtctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggannnnnnngg |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
22363498 |
gccaaacatttgaagatctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgacaaagctgaaatggggatttttttgg |
22363597 |
T |
|
| Q |
104 |
gttatgcagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattggga |
203 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22363598 |
gttatgtagcaagctccaaaggttatagagtgtacaacttgaagacaaaacaaattgtgataagaagagacattgatgttgatgaaaatgtatattggga |
22363697 |
T |
|
| Q |
204 |
ttgggaaaatgatga |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22363698 |
ttgggaaaatgatga |
22363712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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