View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0648_low_72 (Length: 231)
Name: NF0648_low_72
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 44631184 - 44631285
Alignment:
| Q |
1 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaattagtgataa |
100 |
Q |
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| T |
44631184 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaattagtgataa |
44631283 |
T |
|
| Q |
101 |
gt |
102 |
Q |
| |
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|| |
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| T |
44631284 |
gt |
44631285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 44798164 - 44798265
Alignment:
| Q |
1 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaattagtgataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
44798164 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaattagtgataa |
44798263 |
T |
|
| Q |
101 |
gt |
102 |
Q |
| |
|
|| |
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|
| T |
44798264 |
gt |
44798265 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 35161941 - 35161846
Alignment:
| Q |
1 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaattagtgataa |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35161941 |
gacgaaggaggatgttgcattttttgacatacgtctgagagagaataataaaga------aattatgaattatgatatttatagaagaaattagtgataa |
35161848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 39840227 - 39840176
Alignment:
| Q |
17 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
68 |
Q |
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|
| T |
39840227 |
gcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatga |
39840176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39839889 - 39839849
Alignment:
| Q |
1 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
41 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| |
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| T |
39839889 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
39839849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 39845111 - 39845062
Alignment:
| Q |
17 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
68 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||| |||||||| |
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|
| T |
39845111 |
gcattttttgatgtacgtct--gaaagaataagaaagaagaagcaattatga |
39845062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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