View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0648_low_76 (Length: 222)

Name: NF0648_low_76
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0648_low_76
NF0648_low_76
[»] scaffold1272 (1 HSPs)
scaffold1272 (1-152)||(1285-1436)
[»] scaffold0483 (1 HSPs)
scaffold0483 (1-140)||(7668-7807)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-129)||(26424-26552)
[»] chr4 (6 HSPs)
chr4 (1-130)||(10270223-10270352)
chr4 (4-128)||(15454162-15454286)
chr4 (7-129)||(15311433-15311555)
chr4 (25-140)||(18278153-18278268)
chr4 (10-56)||(16287821-16287867)
chr4 (96-133)||(21336150-21336187)
[»] chr5 (2 HSPs)
chr5 (1-133)||(42790870-42791002)
chr5 (25-140)||(23490841-23490956)
[»] chr2 (3 HSPs)
chr2 (8-140)||(23928158-23928290)
chr2 (25-140)||(27345593-27345708)
chr2 (16-52)||(12092584-12092620)
[»] scaffold0096 (1 HSPs)
scaffold0096 (25-140)||(12388-12503)
[»] chr6 (3 HSPs)
chr6 (1-128)||(18734368-18734495)
chr6 (4-130)||(19861741-19861867)
chr6 (25-140)||(27964023-27964138)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-133)||(386975-387085)
[»] chr7 (1 HSPs)
chr7 (25-104)||(18159706-18159785)
[»] chr1 (1 HSPs)
chr1 (25-140)||(24975479-24975594)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-140)||(8444-8583)
[»] scaffold0008 (1 HSPs)
scaffold0008 (6-127)||(251740-251861)


Alignment Details
Target: scaffold1272 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 1285 - 1436
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||    
T  1285 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccctttcctctccagaaacggagcctttggttggttgacgccag 1384  T
Q  101 cttctcctagatcggctactgcgatctcagcgatgatttttgtaacgccctc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1385 cttctcctagatcggctactgcgatctcagcgatgatttttgtaacgccctc 1436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 7668 - 7807
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |    
T  7668 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcctttggtgggttgacgccgg 7767  T
Q  101 cttctcctagatcggctactgcgatctcagcgatgatttt 140  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  7768 cttctcgtagatcggctactgcgatctcagcgatgatttt 7807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 26552 - 26424
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||  || || |||| || ||||| |||| |||||    
T  26552 tcgtcggtgacgtgcccgtggcacttgtggaatcgacaatattttgttttgtcgactcccttcctctcttgagacagagccttgggtggcttgacgccag 26453  T
Q  101 cttctcctagatcggctactgcgatctca 129  Q
    |||||  |||  |||||||||||||||||    
T  26452 cttctgttaggccggctactgcgatctca 26424  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10270352 - 10270223
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||  || ||||||| || ||||| |||| | |||    
T  10270352 tcgtcggtgacgtgcccgtggcacttttggaatcgacaatattttgttttgtcgactcccttcctctctcgagacggagctttgggtggcttgacgtcag 10270253  T
Q  101 cttctcctagatcggctactgcgatctcag 130  Q
    |||||   ||||||||||| ||||||||||    
T  10270252 cttctttaagatcggctaccgcgatctcag 10270223  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 15454162 - 15454286
Alignment:
Q  4 tcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagctt 103  Q
    ||||| ||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||| |  | ||||| |||||| | |||| ||||||||    
T  15454162 tcagtaacgtgcccgtggcacttgtggaatcgacaacatttggttttgtcgacccccttcctctcctgtgaaggagcctttggtagcttgacgccagctt 15454261  T
Q  104 ctcctagatcggctactgcgatctc 128  Q
    |   |||||||||||||| ||||||    
T  15454262 ccgttagatcggctactgtgatctc 15454286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 15311433 - 15311555
Alignment:
Q  7 gtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctc 106  Q
    |||||||| || || ||||||||||||||||| ||||||||||||||||| |||||||||||  || | ||||| ||  |||| |||| |||||||||      
T  15311433 gtgacgtgcccatggcacttgtggaatcgacattattttgttttgtcgactcccttcctctcttgagatggagccttgagtggcttgacgccagcttccg 15311532  T
Q  107 ctagatcggctactgcgatctca 129  Q
     ||||||||||||||||||||||    
T  15311533 ttagatcggctactgcgatctca 15311555  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 18278268 - 18278153
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgcga 124  Q
    |||||||||||| | ||||| ||||||||||| | |||||||||  || | ||||| |||||||| |||| |||| ||||    ||||||||||| ||||    
T  18278268 ttgtggaatcgatagtatttcgttttgtcgactctcttcctctcatgagatggagcctttggtggcttgatgccaacttccgtcagatcggctaccgcga 18278169  T
Q  125 tctcagcgatgatttt 140  Q
    ||||||||| ||||||    
T  18278168 tctcagcgaggatttt 18278153  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 16287821 - 16287867
Alignment:
Q  10 acgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgac 56  Q
    ||||| |||||||| |||| ||| |||||||||||||||||||||||    
T  16287821 acgtggccgtgacatttgtagaaccgacaatattttgttttgtcgac 16287867  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 21336187 - 21336150
Alignment:
Q  96 gccagcttctcctagatcggctactgcgatctcagcga 133  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21336187 gccagcttctgttagatcggctactgcgatctcagcga 21336150  T

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Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42790870 - 42791002
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    |||||||||| ||  ||||| || |||||||||| |||||||||| |||||||||| |||||||||||| || ||||||| |||||||| |||| |||||    
T  42790870 tcgtcagtgatgtacccgtggcatttgtggaatcaacaatattttattttgtcgactcccttcctctcctgagacggagcctttggtggcttgatgccag 42790969  T
Q  101 cttctcctagatcggctactgcgatctcagcga 133  Q
    |||||   ||||||||||| |||||||| ||||    
T  42790970 cttctatcagatcggctaccgcgatctcggcga 42791002  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 23490841 - 23490956
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgcga 124  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| || | || || |||||||| |||| ||||||||||  |||||||||||| ||||    
T  23490841 ttgtggaatcgacagtattttgttttgtcgactcccttcctctcctgagatggggcctttggtggcttgatgccagcttcttttagatcggctaccgcga 23490940  T
Q  125 tctcagcgatgatttt 140  Q
    ||||| ||| ||||||    
T  23490941 tctcaacgaggatttt 23490956  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 23928158 - 23928290
Alignment:
Q  8 tgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcc 107  Q
    ||||||| |||||| ||||||||||  ||||||||||||||||||| || |||||||||||| || |  |||| |||||||| |||| |||||||| |      
T  23928158 tgacgtgcccgtgaaacttgtggaactgacaatattttgttttgtcaactcccttcctctcctgagattgagcctttggtggcttgacgccagcttttgt 23928257  T
Q  108 tagatcggctactgcgatctcagcgatgatttt 140  Q
    || |||||||||||||||||| |||| ||||||    
T  23928258 tatatcggctactgcgatctcggcgaggatttt 23928290  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 27345593 - 27345708
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgcga 124  Q
    |||||||||||||  ||||||||||| || || |||||||||||| || | ||||| |||||||| |||| |||||||| |   |||||| |||| | ||    
T  27345593 ttgtggaatcgacggtattttgttttctctactcccttcctctcctgagatggagcctttggtggcttgatgccagcttgtgtcagatcgcctaccgtga 27345692  T
Q  125 tctcagcgatgatttt 140  Q
    ||||||||| ||||||    
T  27345693 tctcagcgaggatttt 27345708  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 12092584 - 12092620
Alignment:
Q  16 ccgtgacacttgtggaatcgacaatattttgttttgt 52  Q
    ||||||||||||||||| |||||||||||||||||||    
T  12092584 ccgtgacacttgtggaaccgacaatattttgttttgt 12092620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 12503 - 12388
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgcga 124  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| || | || || |||||||| |||| |||||||||    ||||||||||| ||||    
T  12503 ttgtggaatcgacaatattttattttgtcgactcccttcctctcctgagatggggcctttggtggcttgatgccagcttccatcagatcggctaccgcga 12404  T
Q  125 tctcagcgatgatttt 140  Q
    ||||||||| ||||||    
T  12403 tctcagcgaggatttt 12388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 18734368 - 18734495
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    ||||||||||||||  ||||  ||||| ||| |||||| ||||||||||||||||| | |||||||||| || | ||||| |||||||| |||| |||||    
T  18734368 tcgtcagtgacgtgttcgtggaacttgcggattcgacagtattttgttttgtcgactcgcttcctctccggagatggagcctttggtggcttgacgccag 18734467  T
Q  101 cttctcctagatcggctactgcgatctc 128  Q
    |||||   ||||||||||||||||||||    
T  18734468 cttctgtcagatcggctactgcgatctc 18734495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 19861867 - 19861741
Alignment:
Q  4 tcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagctt 103  Q
    ||||||||||| | ||| ||||| |||||  ||||||| |||||| ||||||| || ||||||||  || ||||||| |||||||| |||| ||||||||    
T  19861867 tcagtgacgtgcctgtggcacttctggaactgacaatactttgttatgtcgactcctttcctctcttgagacggagcctttggtggcttgacgccagctt 19861768  T
Q  104 ctcctagatcggctactgcgatctcag 130  Q
    ||  |||||||||||||||||||||||    
T  19861767 ctgttagatcggctactgcgatctcag 19861741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 27964023 - 27964138
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgcga 124  Q
    |||||||||||| | |||||| |||||||||| |||||||||||  || | || || |||||||| |||| | ||||||||   |||||||||||  | |    
T  27964023 ttgtggaatcgatagtattttcttttgtcgactcccttcctctcttgagatggggcctttggtggcttgatgtcagcttctgtcagatcggctaccacaa 27964122  T
Q  125 tctcagcgatgatttt 140  Q
    ||||||||| ||||||    
T  27964123 tctcagcgaggatttt 27964138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 386975 - 387085
Alignment:
Q  23 acttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgc 122  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  || | ||||| |||||| | |||| ||||||||||  ||||| ||| || ||    
T  386975 acttgtggaatcgacaatattttgttttgtcaacccccttcctctctcgagatggagcctttggttgcttgacgccagcttctgttagattggcgacagc 387074  T
Q  123 gatctcagcga 133  Q
    |||||||||||    
T  387075 gatctcagcga 387085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 18159706 - 18159785
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttc 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||||||| |||||||| |||| | |||||||    
T  18159706 ttgtggaatcgacaatattttgttttgtcgactcccttcctctcctgagacggagcctttggtggcttgatgtcagcttc 18159785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 24975594 - 24975479
Alignment:
Q  25 ttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttctcctagatcggctactgcga 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||   || | || || |||||||| |||| ||||||||||   ||||||||||| ||||    
T  24975594 ttgtggaatcgacaatattttgttttgtcgactcccttcctcttttgagatggggcctttggtggcttgatgccagcttctatcagatcggctaccgcga 24975495  T
Q  125 tctcagcgatgatttt 140  Q
    ||||| ||| ||||||    
T  24975494 tctcatcgaggatttt 24975479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8444 - 8583
Alignment:
Q  1 tcgtcagtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccag 100  Q
    |||||||| || || ||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||    | | ||| |||||||| |||| ||||     
T  8444 tcgtcagtaacatgcccgtggcacttgtggaaccgacgatattttgttttgtcgacccctttcctctcctatgatgaagcctttggtggcttgacgccaa 8543  T
Q  101 cttctcctagatcggctactgcgatctcagcgatgatttt 140  Q
    ||||    ||||| |||||||||||||| |||| ||||||    
T  8544 cttccgtcagatcagctactgcgatctcggcgaggatttt 8583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 251740 - 251861
Alignment:
Q  6 agtgacgtgaccgtgacacttgtggaatcgacaatattttgttttgtcgacccccttcctctccagaaacggagcatttggtgggttgaagccagcttct 105  Q
    ||||||||| ||||| ||||||||||| |||||||||  | |||||  ||| |||||||||||| |  | | ||| |||||||| |||| |||| |||||    
T  251740 agtgacgtgcccgtggcacttgtggaaccgacaatatacttttttgcagactcccttcctctcctggcaggaagcctttggtggcttgatgccaacttct 251839  T
Q  106 cctagatcggctactgcgatct 127  Q
      |||||| | |||||||||||    
T  251840 gttagatcaggtactgcgatct 251861  T

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