View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0648_low_9 (Length: 423)
Name: NF0648_low_9
Description: NF0648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0648_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 47 - 384
Target Start/End: Original strand, 47261835 - 47262172
Alignment:
| Q |
47 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47261835 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
47261934 |
T |
|
| Q |
147 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47261935 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
47262034 |
T |
|
| Q |
247 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262035 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
47262134 |
T |
|
| Q |
347 |
caatgcttctgtccaagttcaatagcttgttgttctcc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
47262135 |
caatgcttctgtccaagttcaatagcttgttgttctcc |
47262172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 109 - 382
Target Start/End: Original strand, 35406178 - 35406451
Alignment:
| Q |
109 |
ttgaacagtaaccacattttcaagaactccaacatcaacattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttatta |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406178 |
ttgaatagtaaccacattttcaagaactccaacatcaacattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttatta |
35406277 |
T |
|
| Q |
209 |
agagctcctttttgagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacct |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
35406278 |
agagctcctttttgagattgaatgaacttttcaattcttttctttctcttacgcttttcacatcgagattcatactttttaggaggcatagtaaaaatct |
35406377 |
T |
|
| Q |
309 |
ggaatttctcactgttttgttagcttatgatcagtcagcaatgcttctgtccaagttcaatagcttgttgttct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
35406378 |
ggaatttctcactgttttgttagcttatgatcagtcagcaatgcttctgtccaagttctatagctttttgttct |
35406451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 23071681 - 23071741
Alignment:
| Q |
47 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat |
107 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |
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|
| T |
23071681 |
acatcatcaataatgggcacatcacctctatttttctgatcaacactttcattctccatat |
23071741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 45437009 - 45436976
Alignment:
| Q |
109 |
ttgaacagtaaccacattttcaagaactccaaca |
142 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
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|
| T |
45437009 |
ttgaatagtaaccacattttcaagaactccaaca |
45436976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 47 - 384
Target Start/End: Complemental strand, 9718322 - 9717985
Alignment:
| Q |
47 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9718322 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
9718223 |
T |
|
| Q |
147 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9718222 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
9718123 |
T |
|
| Q |
247 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9718122 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
9718023 |
T |
|
| Q |
347 |
caatgcttctgtccaagttcaatagcttgttgttctcc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9718022 |
caatgcttctgtccaagttcaatagcttgttgttctcc |
9717985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 47 - 384
Target Start/End: Complemental strand, 15928395 - 15928055
Alignment:
| Q |
47 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15928395 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
15928296 |
T |
|
| Q |
147 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15928295 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
15928196 |
T |
|
| Q |
247 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15928195 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
15928096 |
T |
|
| Q |
347 |
caa---tgcttctgtccaagttcaatagcttgttgttctcc |
384 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15928095 |
caatgctgcttctgtccaagttcaatagcttgttgttctcc |
15928055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 47 - 384
Target Start/End: Original strand, 1803329 - 1803666
Alignment:
| Q |
47 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagtaaccacattttcaagaactccaacatcaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1803329 |
acatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatatcttgaacagaaaccacattttcaagaactccaacatcaa |
1803428 |
T |
|
| Q |
147 |
cattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1803429 |
cattatcaacattttcattttcaataggaatttgttgcggatattttatcaaaaacttattaagagctcctttttgagattgaattaacttttcaattct |
1803528 |
T |
|
| Q |
247 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1803529 |
tttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacctggaatttctcactgttttgttagcttatgatcagtcag |
1803628 |
T |
|
| Q |
347 |
caatgcttctgtccaagttcaatagcttgttgttctcc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1803629 |
caatgcttctgtccaagttcaatagcttgttgttctcc |
1803666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 18005562 - 18005626
Alignment:
| Q |
320 |
ctgttttgttagcttatgatcagtcagcaatgcttctgtccaagttcaatagcttgttgttctcc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18005562 |
ctgttttgttagcttatgatcagtcagcaatgcttctgtccaagttcaatagctttttgttctcc |
18005626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 109 - 384
Target Start/End: Complemental strand, 38988118 - 38987843
Alignment:
| Q |
109 |
ttgaacagtaaccacattttcaagaactccaacatcaacattatcaacattttcattttcaataggaatttgttgcggttcttttatcaaaaacttatta |
208 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38988118 |
ttgaatagtaaccgcattttcaagaactccaacatcaacattatcaacattttcattttcgataagaatttgttgcggttcttttatcaaaaacttatta |
38988019 |
T |
|
| Q |
209 |
agagctcctttttgagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcatactttttaggaggcatagtaaaaacct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
38988018 |
agagctcctttttgagattgaattaactttttaattcttttctttctcctacgcttttcaaatccagattcaaactctttaggaggcagagtaaaaacct |
38987919 |
T |
|
| Q |
309 |
ggaatttctcactgttttgttagcttatgatcagtcagcaatgcttctgtccaagttcaatagcttgttgttctcc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38987918 |
ggaatttctcactgttttgttagcttatgatcagtcagcaatgcttctgtccaagttcaatagctttttgttctcc |
38987843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 286
Target Start/End: Complemental strand, 2244662 - 2244489
Alignment:
| Q |
116 |
gtaaccacattttcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaa |
209 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| || ||||| | |||||||| |||||||||| ||||||||||| | ||| |||| || |
|
|
| T |
2244662 |
gtaaccacattttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaa |
2244566 |
T |
|
| Q |
210 |
gagctcctttttgagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcatacttt |
286 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||| | |||||||| ||||||| || ||| |||| |||||||||||| |
|
|
| T |
2244565 |
gagctcctctttgagattgaataaactcttcaagttttttctttttcttacgtttctcatatccggattcatacttt |
2244489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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