View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_high_10 (Length: 228)
Name: NF0649_high_10
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 42254609 - 42254385
Alignment:
| Q |
4 |
tcaaccttaacttcctcaaacttgacatccaatcttgacccaacaaactccctaggaaaaacaggtggcaaaccaacttgtgtaagaaaagctctaaact |
103 |
Q |
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| T |
42254609 |
tcaaccttaacttcctcaaacttggcatccaatcttgacccaacaaactccctaggaaaaacaggtggcaaaccaacttgtgtaagaaaagctctaaact |
42254510 |
T |
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| Q |
104 |
ttggatgctccaaactcgaaaaagaaacagaaccacaagattcataaacccaatcagctaaaaaatcaatagcactatcaacttgtgtcttctgaagacc |
203 |
Q |
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| T |
42254509 |
ttggatgctccaaactcgaaaaagaaacagaaccacaagattcataaacccaatcagctaaaaaatcaatagcactatcaacttgtgtcttctgaagaac |
42254410 |
T |
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| Q |
204 |
aaccccaggtgaagttttaggactc |
228 |
Q |
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||||||||||||||||||||||||| |
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| T |
42254409 |
aaccccaggtgaagttttaggactc |
42254385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 20842331 - 20842422
Alignment:
| Q |
70 |
ggcaaaccaacttgtgtaagaaaagctctaaactttggatgctccaaactcgaaaaagaaacagaaccacaagattcataaacccaatcagc |
161 |
Q |
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|||||||||||||| | |||||||||| ||||||| |||||| | | || |||||||||||||||||| ||||||||| ||||||||| |
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| T |
20842331 |
ggcaaaccaacttgagaaagaaaagcttgaaactttctatgctcaattgttgacaaagaaacagaaccacaacattcataaaaccaatcagc |
20842422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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