View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_1 (Length: 652)
Name: NF0649_low_1
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 92 - 640
Target Start/End: Complemental strand, 34088003 - 34087467
Alignment:
| Q |
92 |
ccatcaatctcaattccatttccatttcaattgattggatggaattcatcccttcttcttatcgtacgctgtacattcattatttttgtccgtaggatta |
191 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34088003 |
ccatcaatctcaattccaattccatttcaattgattggatggaattcatcccttctt---atcgtacgctgtacattcattatttttgtccgtaggatta |
34087907 |
T |
|
| Q |
192 |
ttattagattaactaattaatattaccatgtttacatcattgcgttttcttcacacttcaatttccaagttaagtttttagttttggattagcaatagca |
291 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34087906 |
ttattagattaa----ttaatattaccatgtttacatcattgcgttttcttcacacttcaatttccaagttaagtttttagttttggattagcaatagca |
34087811 |
T |
|
| Q |
292 |
gcatgtcacgctaatcatgattaaagactaaatcaagattatcacatgttaatcattagtttcagtgtttgacaccctctgatagctttagtcaaaagat |
391 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34087810 |
---tgtcacgctaatcatgattaaagactaaatgaagattatcacatgttaatcattagtttcagtgtttgacaccctctgatagctt-agtcaaaagat |
34087715 |
T |
|
| Q |
392 |
cttgaatagcggaactctaaaagtgataactatgatggttttggagttgctgttgttaaagaagtagtacttatttacttttgatgtcggg-ttaccttt |
490 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34087714 |
cttgaataacggaactctaaaagtgataactatgatggttttggagttgctgttgttaaagaagtagtacttatttacttttgatgtcggggttaccttt |
34087615 |
T |
|
| Q |
491 |
tcacaataaaaattaagaaaacttaactcttgctggtatttgatttaagttgacagtttggattttaatgcatttaaactgtatttgtttcttcatgagc |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
34087614 |
tcacaataaaaattaagaaaacttaactcttgctggtatttgatttaagttgacagtttggattttaatgcatttaaactgtatttatttcttcacgagc |
34087515 |
T |
|
| Q |
591 |
gagcatagtatgaatccacgattcaacacaaaataatccactgtcgttca |
640 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34087514 |
gagcatattatgaatccacgattcaacac--aataatccactgtcgttca |
34087467 |
T |
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