View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0649_low_10 (Length: 361)

Name: NF0649_low_10
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0649_low_10
NF0649_low_10
[»] chr4 (9 HSPs)
chr4 (82-361)||(25201464-25201741)
chr4 (160-357)||(13957478-13957676)
chr4 (85-354)||(51758632-51758901)
chr4 (160-357)||(42511391-42511586)
chr4 (197-357)||(10142410-10142571)
chr4 (280-349)||(14192078-14192147)
chr4 (186-357)||(51337817-51337992)
chr4 (228-357)||(28143201-28143333)
chr4 (83-321)||(20151992-20152231)
[»] chr7 (13 HSPs)
chr7 (82-357)||(39038316-39038589)
chr7 (83-357)||(43178652-43178923)
chr7 (206-357)||(24441711-24441864)
chr7 (228-357)||(6195673-6195805)
chr7 (186-357)||(6189157-6189332)
chr7 (280-357)||(19311696-19311773)
chr7 (186-357)||(48636868-48637043)
chr7 (136-345)||(23305442-23305648)
chr7 (280-357)||(8069846-8069923)
chr7 (286-345)||(8113566-8113625)
chr7 (160-296)||(8113640-8113778)
chr7 (186-357)||(48238625-48238799)
chr7 (197-270)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (83-349)||(11648170-11648435)
chr8 (82-357)||(960733-961008)
chr8 (208-314)||(35824166-35824273)
chr8 (258-357)||(602180-602280)
chr8 (204-357)||(11994468-11994623)
chr8 (160-278)||(9381946-9382062)
chr8 (210-292)||(32073462-32073545)
chr8 (280-349)||(2878970-2879039)
chr8 (103-270)||(24683070-24683231)
chr8 (280-357)||(6927311-6927388)
chr8 (280-357)||(28509524-28509601)
chr8 (280-357)||(28516731-28516808)
[»] chr6 (7 HSPs)
chr6 (82-344)||(1830844-1831104)
chr6 (160-357)||(11680522-11680720)
chr6 (196-356)||(14677914-14678076)
chr6 (280-357)||(33516380-33516457)
chr6 (196-349)||(4064998-4065150)
chr6 (206-321)||(14679000-14679116)
chr6 (301-354)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (82-356)||(5120580-5120856)
chr5 (160-357)||(43171071-43171267)
chr5 (82-242)||(23318168-23318327)
chr5 (196-349)||(26402144-26402295)
chr5 (196-357)||(14651494-14651656)
chr5 (186-357)||(7850480-7850655)
chr5 (280-357)||(38491310-38491387)
chr5 (82-157)||(33922247-33922322)
[»] chr1 (12 HSPs)
chr1 (82-242)||(12783770-12783929)
chr1 (96-313)||(47397224-47397437)
chr1 (208-356)||(12028035-12028183)
chr1 (208-345)||(5208454-5208592)
chr1 (244-349)||(48646236-48646342)
chr1 (186-357)||(36296868-36297043)
chr1 (186-357)||(42722403-42722578)
chr1 (228-357)||(28945565-28945697)
chr1 (280-349)||(26221954-26222023)
chr1 (279-349)||(49228403-49228473)
chr1 (244-349)||(35501355-35501460)
chr1 (231-278)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (160-354)||(47185206-47185401)
chr3 (280-349)||(6024518-6024587)
chr3 (186-357)||(23044650-23044825)
chr3 (228-357)||(31884710-31884842)
chr3 (226-279)||(44879476-44879529)
chr3 (286-357)||(44879802-44879873)
[»] chr2 (17 HSPs)
chr2 (160-357)||(25621679-25621877)
chr2 (160-345)||(14904265-14904451)
chr2 (82-251)||(6883446-6883607)
chr2 (82-190)||(25415782-25415890)
chr2 (160-349)||(38422322-38422512)
chr2 (141-309)||(43672737-43672906)
chr2 (196-357)||(90085-90248)
chr2 (280-349)||(2565866-2565935)
chr2 (280-349)||(18780937-18781006)
chr2 (228-357)||(19678245-19678377)
chr2 (280-357)||(6271360-6271437)
chr2 (186-357)||(29303342-29303517)
chr2 (280-357)||(45277256-45277333)
chr2 (90-182)||(10023326-10023418)
chr2 (280-357)||(7880113-7880190)
chr2 (276-345)||(25415498-25415567)
chr2 (299-349)||(6883603-6883653)
[»] scaffold0385 (1 HSPs)
scaffold0385 (243-359)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (160-249)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (284-349)||(2570-2635)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 82 - 361
Target Start/End: Original strand, 25201464 - 25201741
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  25201464 ttattgatataagttatcaagtgtgctaaaattcat---agaaagtacacttttaacaacagtctaatattgattttttatcatcataatggacttgtta 25201560  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 280  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  25201561 gaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgt 25201660  T
Q  281 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatga 361  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25201661 atcaaatattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatga 25201741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 160 - 357
Target Start/End: Original strand, 13957478 - 13957676
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||    
T  13957478 tatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatcta 13957577  T
Q  260 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| |||||| |||| ||||||||| |||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||    
T  13957578 aaaactctaacactaattttgtatcatgtattatcattgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtg 13957676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 85 - 354
Target Start/End: Original strand, 51758632 - 51758901
Alignment:
Q  85 ttgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaa 184  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||| |||||| |  |||||| ||||||||| ||||||| |||| ||||||||| |     
T  51758632 ttgatgtaagttattaagtgtgctaaaattcaccattgaaggtacacctttaacta--gtctaacattaattttgtatcatcgtaataaacttgttaaag 51758729  T
Q  185 atacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatc 283  Q
    ||||||||   ||||||| || ||||||||||||||| |||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||||||    
T  51758730 atacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatc 51758829  T
Q  284 aagtattattgttgttatgag-tttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 354  Q
    | ||||||||||||||||||| ||||||||||  || ||||  ||| ||||||||||| |||||||| ||||    
T  51758830 atgtattattgttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattac 51758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 160 - 357
Target Start/End: Complemental strand, 42511586 - 42511391
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||| ||||||||||||||||| |||||| |   ||||||| ||||||||||||||||||||| ||||||| |||||||||  |||||||||  ||||    
T  42511586 tatcattataatgaacttgttagagatacttctaacatataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttcta 42511487  T
Q  260 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||  |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||||    
T  42511486 aaaag--taacactaattttgtatcatgtattattgttgttatgagtttaacattggagaa-tttgcatctaagagtttaaaatttagttaattacgtg 42511391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 10142410 - 10142571
Alignment:
Q  197 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgt 295  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| || |||||||||| || ||||||||||||| ||||||| |||||| ||||||||||    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  296 tgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||| |||||||||||| ||||||||| ||  |||||||||||||||| ||| |||||||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtg 10142571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 14192147 - 14192078
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  14192147 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaatta 14192078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 51337817 - 51337992
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 51337916  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  51337917 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 51337992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 357
Target Start/End: Complemental strand, 28143333 - 28143201
Alignment:
Q  228 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 324  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28143333 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28143234  T
Q  325 tatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| ||| || ||||||||||||  |||||||    
T  28143233 tatccaaatgtctaaaatttaattgattacgtg 28143201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 321
Target Start/End: Complemental strand, 20152231 - 20151992
Alignment:
Q  83 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 182  Q
    ||||||||||||| | |||||||||| |||||| |||| | |   | ||| ||||||||| ||||| | | || || ||| |||| ||| |||||| |||    
T  20152231 tattgatataagtgagtaagtgtgcttaaattcctcattggagacatactattaacaacattctaacactcatattatataatcaaaataaacttgatag 20152132  T
Q  183 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac-tctaatttgta 281  Q
    | |||||| |   ||||||| ||| ||||||| ||||| || | || |||||||||||||||| | | ||| ||||||||||| |||| |    ||||||    
T  20152131 agatacttgtaacatataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaacattggttttgta 20152032  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaatt 321  Q
    |||| |||| ||||||||||| |||||| |||| ||||||    
T  20152031 tcaactattgttgttgttatgggtttaatattggagaatt 20151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 82 - 357
Target Start/End: Complemental strand, 39038589 - 39038316
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||| ||||| |||||||||||| |||||||||    
T  39038589 ttattgatataaattattaagtgtgctaaaattcatcattgaaggtacacttttaacaacaatccaacattgattttgtatcatcataataaacttgtta 39038490  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 280  Q
    || ||||||||   ||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||| |||||||||||||||| |||| |||||    
T  39038489 gagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgt 39038390  T
Q  281 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| |||||||||||||||||||||||||||||  ||  |||  ||| |||||||||||||||||||| |||||||    
T  39038389 atcatgtattattgttgttatgagtttaacattg-gga--tttccatccaaaagtttaaaatttaattaattacgtg 39038316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 83 - 357
Target Start/End: Complemental strand, 43178923 - 43178652
Alignment:
Q  83 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 182  Q
    |||||||||||||||||||||||| ||||||| | ||| ||| |||||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||| |||    
T  43178923 tattgatataagttattaagtgtgttaaaattaaccattgaaggtacacatttaacaatagtctaacattgattttgtatcatcataatgaatttggtag 43178824  T
Q  183 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 281  Q
    | ||||||||   ||||||| |||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| |||| ||||||    
T  43178823 agatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 43178724  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    | | ||||||   |||||||||||||||||||| ||| |||| |||| |||||||||||||||||||| |||||||    
T  43178723 t-atgtatta---ttgttatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtg 43178652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 206 - 357
Target Start/End: Complemental strand, 24441864 - 24441711
Alignment:
Q  206 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgag 304  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||  ||| ||||||||| |||||||||||||| ||||    
T  24441864 aggaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgag 24441765  T
Q  305 ttt-aacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||    
T  24441764 tttaaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtg 24441711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 357
Target Start/End: Complemental strand, 6195805 - 6195673
Alignment:
Q  228 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 324  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  6195805 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 6195706  T
Q  325 tatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| ||| |||||||||||||||| |||||||    
T  6195705 tatccaaatgtttaaaatttaattaattacgtg 6195673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 6189332 - 6189157
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 6189233  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  6189232 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtataaaatttaattaattacgtg 6189157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 19311773 - 19311696
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  19311773 tatcaagtattattgttgttatgggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtg 19311696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 48636868 - 48637043
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48636967  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  48636968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 48637043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 345
Target Start/End: Original strand, 23305442 - 23305648
Alignment:
Q  136 aacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagga 235  Q
    ||||||||||||| ||| ||||| || |||| ||||||||||| ||      ||| | | |||| || |||||||| || ||||||||||||||||| ||    
T  23305442 aacaacagtctaacattgattttgtaacatcgtaatgaacttggta------cttgtagcatattaaaagaggaataatctacttctagcatacaaatga 23305535  T
Q  236 gttcttgcatctatgatttctctaaaaagtctaactctaatttg-tatc--aagtattattgttgttatgagtttaacattgaagaattttgtatctaaa 332  Q
    ||||| | ||||  |||| ||| ||||||||||||  | ||||  ||||  |||||||||||| |||||| ||||||||||| | ||||||||||| |||    
T  23305536 gttctcgtatcttagattcctcaaaaaagtctaaccttgattttctatcgcaagtattattgtagttatgggtttaacattggataattttgtatccaaa 23305635  T
Q  333 agtttaaaattta 345  Q
    ||| |||||||||    
T  23305636 agtctaaaattta 23305648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 8069846 - 8069923
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  8069846 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 8069923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 8113625 - 8113566
Alignment:
Q  286 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 345  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  8113625 gtattattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaattta 8113566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 8113778 - 8113640
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctct- 258  Q
    |||||||||||||||||||||||| |||  |||   |||||||   | ||||||||||||||||  ||||||||||  ||||| ||| |||||| ||||     
T  8113778 tatcatcataatgaacttgttagagatatctataacatataaaagtaagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctcta 8113679  T
Q  259 aaaaagtctaactctaa-tttgtatcaagtattattgtt 296  Q
    |||||||||||| |||| ||||||||| |||||||||||    
T  8113678 aaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 48238625 - 48238799
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48238724  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||  ||| || ||||||||||||| |||||||    
T  48238725 tcaagtattattgttgttatgtgtt-aacattggagaattttgtattcaaatgtctaaaatttaattaattacgtg 48238799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 14573995 - 14574068
Alignment:
Q  197 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 270  Q
    |||||| ||| ||||||||||||| || | || |||||||||||||| ||| ||||| |||| |||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaac 14574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 83 - 349
Target Start/End: Complemental strand, 11648435 - 11648170
Alignment:
Q  83 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 182  Q
    |||| ||||||||||||||||||||| |||| || ||| |||  ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  11648435 tattaatataagttattaagtgtgcttaaatacaccattgaagttacacatttaacaatagtctaacattaattttgtatcattataatgaacttgttag 11648336  T
Q  183 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 281  Q
    | |||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| ||||||    
T  11648335 agatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgta 11648236  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    |||  | |||||||||||||||||||||||||| || |||||  ||| ||||||||||||||||||||    
T  11648235 tca--tgttattgttgttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaatta 11648170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 82 - 357
Target Start/End: Complemental strand, 961008 - 960733
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| || || ||||||||| ||||||||||||||||||||||    
T  961008 ttattgatataagttattaagtgtgctaaaattgaccattgaaggcacacttttaacaacaatccaacattaattttgtatcatcataatgaacttgtta 960909  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaag-tctaactctaattt-g 279  Q
    |  ||  ||||   ||||||| |||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||||  ||||||  |||||| |    
T  960908 gctatgtttataacatataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttg 960811  T
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
     | || ||||| ||||||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||| |||||||    
T  960810 caccatgtattcttgttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtg 960733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 35824166 - 35824273
Alignment:
Q  208 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 306  Q
    ||||||||||||||| | |||||||||| |||||  |||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagtt 35824265  T
Q  307 taacattg 314  Q
    ||||||||    
T  35824266 taacattg 35824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 602280 - 602180
Alignment:
Q  258 taaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 356  Q
    ||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||| ||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  357 g 357  Q
    |    
T  602180 g 602180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 11994623 - 11994468
Alignment:
Q  204 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattattgttgttat 301  Q
    ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||||||||||    
T  11994623 agaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattttaacacatttttttttatcaagtattattgttgttat 11994524  T
Q  302 gagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    | ||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  11994523 gggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtg 11994468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 9382062 - 9381946
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||||||||||||||||||||   ||| | | | ||||||| | | ||||||||||||||||  ||||||| ||||||||| |||||||||| |||||    
T  9382062 tatcatcataatgaacttgttagc--tacctgtagcatataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctcta 9381965  T
Q  260 aaaagtctaactctaattt 278  Q
    ||||||||||| |||||||    
T  9381964 aaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 32073462 - 32073545
Alignment:
Q  210 atgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattat 292  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtatcttgtattat 32073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 2879039 - 2878970
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || |||||||||||||    
T  2879039 tatcaagtattattgttgttatgagtttaatattggagaattttgtatccaaatgtctaaaatttaatta 2878970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 24683070 - 24683231
Alignment:
Q  103 tgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaa 202  Q
    |||||||||||||| ||| | | ||||||  ||||||||||||||| ||| ||||| ||| |||||||| |||||| ||       || | | |||||||    
T  24683070 tgtgctaaaattcaccattggaggtacacagttaacaacagtctaacattgattttgtattatcataataaacttggtat------ttgtagcatataaa 24683163  T
Q  203 gagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 270  Q
     ||||||||||| ||||| ||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  24683164 aagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaac 24683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 6927388 - 6927311
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  6927388 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 6927311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 28509524 - 28509601
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  28509524 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 28509601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 28516731 - 28516808
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  28516731 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 28516808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 82 - 344
Target Start/End: Original strand, 1830844 - 1831104
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||| ||| ||| ||||| ||||||||||||||||||| ||    
T  1830844 ttattgatataagttattaagtgtcctaaaattaaccattgaaagtacacatttaacaatagtataacattgattttgtatcatcataatgaacttgcta 1830943  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 280  Q
    |||||||||||   ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   ||||| |||||||||||||||  |||| |||||    
T  1830944 gaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgt 1831043  T
Q  281 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattt 344  Q
    |||| ||||||   ||||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  1831044 atcatgtatta---ttgttataagtttaacattggagaattttccatccaaaagtttaaaattt 1831104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 160 - 357
Target Start/End: Complemental strand, 11680720 - 11680522
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||||||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||| |||  | ||||||  |   |||| |||| ||| |    
T  11680720 tatcatcataatgaacttgttagagatacttatagcatataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaa 11680621  T
Q  260 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||    
T  11680620 aaaagtctaacaataattttgtatcaagtattattgttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtg 11680522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 356
Target Start/End: Original strand, 14677914 - 14678076
Alignment:
Q  196 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 293  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| |||||| |  |  ||| ||||||||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  294 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 356  Q
    ||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgt 14678076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 33516457 - 33516380
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  33516457 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 33516380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 4065150 - 4064998
Alignment:
Q  196 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattg 294  Q
    |||||||  |||||||||||| ||| || |||| ||||||||||||| |||| || || |||||||||||  ||| ||  ||| ||||||||||| ||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt--aacgctggttttgtatcaagtataattg 4065053  T
Q  295 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||| |||| |||||| |||| |||||| || ||| |||||  |||||||||||||    
T  4065052 ttgctatgggtttaatattggagaattatgcatccaaaaggctaaaatttaatta 4064998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 321
Target Start/End: Complemental strand, 14679116 - 14679000
Alignment:
Q  206 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgag 304  Q
    |||||||||| |||| || |||| ||| ||| | |||||||| |||||  |||||||| | |||| ||| ||| |||||||||||||||||| | ||| |    
T  14679116 aggaatgatgcacttgtaacatataaatgagattttgcatctctgattcttctaaaaaatttaacactagttttgtatcaagtattattgttatcatgcg 14679017  T
Q  305 tttaacattgaagaatt 321  Q
    ||||| |||||||||||    
T  14679016 tttaatattgaagaatt 14679000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 1831137 - 1831190
Alignment:
Q  301 tgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 354  Q
    |||||||||||||| ||||||||  ||| ||||||||||||| |||||| ||||    
T  1831137 tgagtttaacattggagaattttcgatccaaaagtttaaaatataattaattac 1831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 82 - 356
Target Start/End: Complemental strand, 5120856 - 5120580
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    |||||||||||| |||| |||||||||||||||||   | ||| ||||||||||||||||||| ||| ||| || || |||||| |||||||||||||||    
T  5120856 ttattgatataaattatcaagtgtgctaaaattcacatttgaaggtacacttttaacaacagtttaacattgatattctatcattataatgaacttgtta 5120757  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagg---agttcttgcatctatgatttctctaaaaagtctaactctaa-tt 277  Q
    || ||||||||   ||||||| ||||||||| ||||||||||||||||||| |   |||||||| |||||||||| || |||||| |||||| |||| ||    
T  5120756 gagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattt 5120657  T
Q  278 tgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 356  Q
    ||||||| |||||||||||||||| ||  |||||||| ||||||||  ||| |||||||||||||||||||| ||||||    
T  5120656 tgtatcatgtattattgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgt 5120580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 357
Target Start/End: Complemental strand, 43171267 - 43171071
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    ||||||||||||||||||  |||| |||| |||   ||||||| | |||||||||||||||||||  |||||||||||||||| || ||||||| |||||    
T  43171267 tatcatcataatgaactt--tagagatacctataacatataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctcta 43171170  T
Q  260 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
     |||||||||| |||| ||||||| | |||||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||    
T  43171169 caaagtctaacactaattttgtattatgtattatttttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtg 43171071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 23318327 - 23318168
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||| ||| ||||| ||| ||||||||||||||||||    
T  23318327 ttattgatataagttattaagtgtgataaatttcaccattgaatgtacacttttaacaacaacataacattgattttgtataatcataatgaacttgtta 23318228  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 242  Q
     | |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23318227 aagatacttatagtatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 196 - 349
Target Start/End: Original strand, 26402144 - 26402295
Alignment:
Q  196 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaat-ttgtatcaagtattattg 294  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||| ||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  295 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
     |   |||||||||| |||| ||||||||  ||| ||||||||||||||||||||    
T  26402244 gt---atgagtttaaaattggagaattttccatccaaaagtttaaaatttaatta 26402295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 357
Target Start/End: Complemental strand, 14651656 - 14651494
Alignment:
Q  196 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc-taatttgtatcaagtattattg 294  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| | |  ||| |||||||||||||||    
T  14651656 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacattttttttatcaagtattattg 14651557  T
Q  295 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  14651556 ttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 14651494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 7850480 - 7850655
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 7850579  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  7850580 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 7850655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 38491310 - 38491387
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  38491310 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 38491387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 33922322 - 33922247
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattt 157  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| |||||| ||| ||| ||||    
T  33922322 ttattgacataagtgattaagtgtgctaaaattcatcattgaaggtacacttttaataacagtttaaaattgattt 33922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 12783929 - 12783770
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  12783929 ttattgataaaagttattaagtgtgttaaaattcatcattgaaggtacacttttaacaacagtctaacattgattttgtatcatcataatgaacttgtta 12783830  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 242  Q
    || |||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  12783829 gagatacttatagcatataaaaagaggaatgatgtacttctaggatac-aaggagttcttg 12783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 96 - 313
Target Start/End: Complemental strand, 47397437 - 47397224
Alignment:
Q  96 tattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggt 195  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||| |||||| ||| ||||| ||||||     ||||||||||||| |||||||| |     
T  47397437 tattaagtgtgctaaaatttaccattgaaggtacacttttaacaaccgtctaacattgattttgtatcat-----tgaacttgttagagatacttatagc 47397343  T
Q  196 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattg 294  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||  |||| ||||||||| ||||| |||    
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  295 ttgttatgagtttaacatt 313  Q
    |||||||||||||||||||    
T  47397242 ttgttatgagtttaacatt 47397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 208 - 356
Target Start/End: Original strand, 12028035 - 12028183
Alignment:
Q  208 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtt 306  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctctaaaa-gtctaacactaattttgtatcatgtattattgttgttatgagtt 12028133  T
Q  307 taacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 356  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||| ||||||    
T  12028134 taacattggagaattttgcatccaaaagtttaaaatttagttaattacgt 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 5208592 - 5208454
Alignment:
Q  208 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 306  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||  ||||| |||||||||| ||     
T  5208592 gaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactgttgttatgggtc 5208493  T
Q  307 taacattgaagaattttgtatctaaaagtttaaaattta 345  Q
    |||||||| ||||||||| ||| ||||||||||||||||    
T  5208492 taacattgtagaattttgcatccaaaagtttaaaattta 5208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 48646236 - 48646342
Alignment:
Q  244 atctatgatttctctaaaaagtctaactctaatttg-tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaat 342  Q
    ||||||| || ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  48646236 atctatggttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaat 48646335  T
Q  343 ttaatta 349  Q
    |||||||    
T  48646336 ttaatta 48646342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 36296868 - 36297043
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 36296967  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  36296968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 36297043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 42722403 - 42722578
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 42722502  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  42722503 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 42722578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 357
Target Start/End: Complemental strand, 28945697 - 28945565
Alignment:
Q  228 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 324  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28945697 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28945598  T
Q  325 tatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| ||| || ||||||||||||| |||||||    
T  28945597 tatccaaatgtctaaaatttaattaattacgtg 28945565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 26221954 - 26222023
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  26221954 tatcaagtattattgtttttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaatta 26222023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 49228473 - 49228403
Alignment:
Q  279 gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |   ||||||||||||| ||||||    
T  49228473 gtatcacgtattattgttgttatgagtttaacattggagaatttttcaatcaaaagtttaaaatgtaatta 49228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 349
Target Start/End: Complemental strand, 35501460 - 35501355
Alignment:
Q  244 atctatgatttctctaaaaagtctaactctaatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatt 343  Q
    |||| ||||||||| |||||||||||| |   ||| |||||||||||||  |||||||| ||||||||||| |||||  |||||  |||||  |||||||    
T  35501460 atctttgatttctcgaaaaagtctaacacatttttttatcaagtattataattgttatgggtttaacattggagaatgatgtatacaaaagcctaaaatt 35501361  T
Q  344 taatta 349  Q
    ||||||    
T  35501360 taatta 35501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 12783675 - 12783628
Alignment:
Q  231 aaggagttcttgcatctatgatttctctaaaaagtctaactctaattt 278  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattt 12783628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 160 - 354
Target Start/End: Original strand, 47185206 - 47185401
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||||| ||||||||||||||| |||||||| | ||||||| |||| |||||||||||| ||   |||||| ||||||||| |||||||||| |||||    
T  47185206 tatcatcacaatgaacttgttagagatacttatagcatataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctcta 47185305  T
Q  260 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 354  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||    
T  47185306 aaaagtctaacactaattttgtatcatgaattattgttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattac 47185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 6024587 - 6024518
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  6024587 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaatta 6024518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 23044825 - 23044650
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 23044726  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  23044725 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 23044650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 357
Target Start/End: Complemental strand, 31884842 - 31884710
Alignment:
Q  228 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 324  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  31884842 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 31884743  T
Q  325 tatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| ||| || ||||||||||||| |||||||    
T  31884742 tatccaaatgtctaaaatttaattaattacgtg 31884710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 44879476 - 44879529
Alignment:
Q  226 atacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg 279  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 44879802 - 44879873
Alignment:
Q  286 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||| ||||||||||||||| |||| ||||||| | ||||| ||| |||||||||| ||| |||||||    
T  44879802 gtattattattgttatgagtttaatattggagaatttggcatctagaagattaaaatttagttaattacgtg 44879873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 357
Target Start/End: Original strand, 25621679 - 25621877
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||| |||||||| |||||||| |||  |||   ||| ||| |||||||||||||||||| || ||||||| ||||| ||| || ||||||| |||||    
T  25621679 tatcattataatgaagttgttagagatatgtatatcatagaaaaagaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctcta 25621778  T
Q  260 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||  || ||||||||||||||||| || |||||||    
T  25621779 aaaggtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtg 25621877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 345
Target Start/End: Original strand, 14904265 - 14904451
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||||||||||||||||||||| ||||||||   ||||||| |||||| |||| ||||| ||| ||| ||| ||||| |||  |||||||||  ||||    
T  14904265 tatcatcataatgaacttgttagagatacttataacatataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttcta 14904364  T
Q  260 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 345  Q
    |||| ||||||  ||| ||||||||| ||||||||||||||| ||| ||||||||| | ||||||| ||  ||||||||||||||||    
T  14904365 aaaaatctaacaataattttgtatcatgtattattgttgttaggaggttaacattggataattttgcattcaaaagtttaaaattta 14904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 251
Target Start/End: Original strand, 6883446 - 6883607
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    |||||||||||| |||||||||||||||||     ||| |||   ||| ||||||||||| ||| || ||| ||||| ||||||||||||||||||||||    
T  6883446 ttattgatataaattattaagtgtgctaaa-----tcaaaga---tacgcttttaacaacggtcgaacattgattttatatcatcataatgaacttgtta 6883537  T
Q  182 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatga 251  Q
    || |||||| | | ||||||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  6883538 gagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 25415890 - 25415782
Alignment:
Q  82 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 181  Q
    |||||||||||| || |||||||| |||||||||||| | ||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  25415890 ttattgatataaatttttaagtgtactaaaattcatctttgaaggtacacttttaacaacaatctaacattgattttgtatcatcataatgaacttgtta 25415791  T
Q  182 gaaatactt 190  Q
    || ||||||    
T  25415790 gagatactt 25415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 349
Target Start/End: Complemental strand, 38422512 - 38422322
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 259  Q
    |||||||| |||||||||| |||| |||||| | | ||||||| ||||||||||||||||| || |||| ||||||||||| | |||| |||||  ||||    
T  38422512 tatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttcta 38422413  T
Q  260 aaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||| ||   ||||||||||||| |||| |||||||| |||| | |||| |||| | || ||| |||||  |||||||||||||    
T  38422412 aaaagtctaacactggttttgtatcaagtaatattattgttatgggtttgatattggagaagtctgcatccaaaaggctaaaatttaatta 38422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 43672906 - 43672737
Alignment:
Q  141 cagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttct 240  Q
    |||||||| ||| || || |||||||| |||||| ||| |||||||||||   | ||||||| ||||||||||||||||| || |||| |||||||||      
T  43672906 cagtctaacattgatattgtatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttac 43672807  T
Q  241 tgcatctatgatttctctaaaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaa 309  Q
     | |||| ||||| |||||||||||||||  || | ||||||||||||||||||| ||||||| ||||||    
T  43672806 ggtatctttgattcctctaaaaagtctaatactgattttgtatcaagtattattgatgttatgggtttaa 43672737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 357
Target Start/End: Complemental strand, 90248 - 90085
Alignment:
Q  196 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 293  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||    
T  90248 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacatttttttttatcaagtattatt 90149  T
Q  294 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  90148 gttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 90085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 2565866 - 2565935
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  2565866 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaatta 2565935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 18781006 - 18780937
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  18781006 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaatta 18780937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 357
Target Start/End: Original strand, 19678245 - 19678377
Alignment:
Q  228 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 324  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  19678245 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 19678344  T
Q  325 tatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||| ||| || ||||||||||||| |||||||    
T  19678345 tatccaaatgtctaaaatttaattaattacgtg 19678377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 6271437 - 6271360
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  6271437 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 6271360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 29303342 - 29303517
Alignment:
Q  186 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 281  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 29303441  T
Q  282 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  29303442 tcaagtattattgttgttatgtgtttagaattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 29303517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 45277333 - 45277256
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| |||||||    
T  45277333 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtg 45277256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 10023326 - 10023418
Alignment:
Q  90 ataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 182  Q
    ||||||||| ||||||||||||||||  ||| ||| |  ||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||    
T  10023326 ataagttatgaagtgtgctaaaattctccattgaatgcgcacttttaacatcaatctaacattgattttgtatcatcataatgaacttgttag 10023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 7880190 - 7880113
Alignment:
Q  280 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtg 357  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || |||||||||| || |||||||    
T  7880190 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaactaattacgtg 7880113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 25415567 - 25415498
Alignment:
Q  276 tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 345  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||||||  ||| |||| |||||||||||    
T  25415567 tttgtatcatgtattattgttgttatgagcttaacattagagaattttccatcaaaaactttaaaattta 25415498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 6883603 - 6883653
Alignment:
Q  299 tatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    |||||||||||||||| |||||||| |||| |||| |||||||||||||||    
T  6883603 tatgagtttaacattggagaattttctatccaaaaatttaaaatttaatta 6883653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 359
Target Start/End: Original strand, 903 - 1020
Alignment:
Q  243 catctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaa 341  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||  |||||||| ||| || ||||||| |    
T  903 catctatgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaata 1002  T
Q  342 tttaattacttacgtgat 359  Q
    |||| ||| |||| ||||    
T  1003 tttagttaattacatgat 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 1104 - 1015
Alignment:
Q  160 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctat 249  Q
    |||||||||||||||||||||||| ||| |||| | ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  1104 tatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtatctat 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 2635 - 2570
Alignment:
Q  284 aagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 349  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||| || |||||||||||||    
T  2635 aagtattattgttgttatgtgtttaacattggataattttgtatccaaatgtctaaaatttaatta 2570  T

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