View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_12 (Length: 309)
Name: NF0649_low_12
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 82 - 278
Target Start/End: Complemental strand, 13655836 - 13655640
Alignment:
| Q |
82 |
atcatcaaatcaagaagaagaggttacaaatgagaggagtgccactttttatctttaccatccatgttcattactccaaaaattccttggaactttcttc |
181 |
Q |
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| T |
13655836 |
atcaccaaatcaagaagaagaggttacaaatgagaggagtgccactttttatctttaccatccatgttcattactccaaaaattccttggaactttcttc |
13655737 |
T |
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| Q |
182 |
aaatgtctagggtttgaaattgaagcaaacagaaaagaacatgatgaagtagaagctcattcagatgcagaagaggatcttggaagtaatgatgatg |
278 |
Q |
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| T |
13655736 |
aaatgtctagggtttgaaattgaagcaaacaaaaaagaacatgatgaagtagaagctcattcagatgcagaagaggatcttgaaagtaatgatgatg |
13655640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 13661239 - 13661132
Alignment:
| Q |
80 |
acatcatcaaatcaagaagaagaggttacaaatgagaggagtgccactttttatctttaccatccatgttcattactccaaaaattccttggaactttct |
179 |
Q |
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|||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13661239 |
acatcaccaaatcaagaagcagaggtttcaaatgagaggagtgccactttttatcttcaccatccatgttctttactccaaaaattccttggaactttct |
13661140 |
T |
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| Q |
180 |
tcaaatgt |
187 |
Q |
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|||||||| |
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| T |
13661139 |
tcaaatgt |
13661132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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