View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0649_low_18 (Length: 270)
Name: NF0649_low_18
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 38850329 - 38850527
Alignment:
| Q |
42 |
atcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850329 |
atcatcatacaagtgaaaactttcaaacgcacaccggtatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgt |
38850428 |
T |
|
| Q |
142 |
aagcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctctg |
239 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850429 |
aagtgaaccgaactatcaacaccaccaaccttttcaaagcactccttaaatttttccctcctactctttgaatgcctcacaaacatgatactctctctg |
38850527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 38325857 - 38325664
Alignment:
| Q |
46 |
tcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagc |
145 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||| || ||||||||| ||| ||||||||| ||| ||| |||| |
|
|
| T |
38325857 |
tcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcatcaaataagttgagttcagactcatagacgagtcctgatgcaagc |
38325758 |
T |
|
| Q |
146 |
gaaccgaactata-acaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctct |
238 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38325757 |
gaacggaactatcgacaccaccaaccttttcaatgcattccttaaatttctcccttctactctttgaatgcctcacaaacatgatgctctctct |
38325664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 38321111 - 38320918
Alignment:
| Q |
42 |
atcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgt |
141 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| || ||||||||| ||| | ||||||| || |||| ||| |
|
|
| T |
38321111 |
atcatcatacaagtgaagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgc |
38321012 |
T |
|
| Q |
142 |
aagcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactct |
234 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||| | ||||| ||| |||| |
|
|
| T |
38321011 |
aagcgaactgaactatcaacaccaccaaccttttcaacgcactccttaaatttttgccttcgactctttgaatccctaaaaaacaagatgctct |
38320918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 38317016 - 38316828
Alignment:
| Q |
42 |
atcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgt |
141 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||| || ||||||||| ||| ||||||||| || |||| ||| |
|
|
| T |
38317016 |
atcatcatacaagtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgc |
38316917 |
T |
|
| Q |
142 |
aagcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgat |
229 |
Q |
| |
|
| || ||| ||||||| ||||||||||||||||||| |||||||||||| ||| ||||||| | ||||||| ||||||||||||||| |
|
|
| T |
38316916 |
aggcaaacagaactatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgat |
38316828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 38313608 - 38313409
Alignment:
| Q |
41 |
catcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatg |
140 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| | | ||||||||||| |||| ||||| || ||||||||| ||| |||||||| ||||| | ||| |
|
|
| T |
38313608 |
catcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatg |
38313509 |
T |
|
| Q |
141 |
taagcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctctg |
239 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||| || || ||||||||| |||||||| ||||||| || ||||||||| |
|
|
| T |
38313508 |
caagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctctg |
38313409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 38306283 - 38306088
Alignment:
| Q |
44 |
catcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||| || || |||| || ||||||||| ||| | ||||||| || |||| ||| || |
|
|
| T |
38306283 |
catcatacaagtgaaaactttcaaacacatgttgatatttaagagcactatcgagcatcaaataagttgagttcacagtcatagacatgtccatatgcaa |
38306184 |
T |
|
| Q |
144 |
gcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctct |
238 |
Q |
| |
|
|||||| ||||| | || |||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
38306183 |
gcgaactgaactgtcaataccaccaaccttttcaacgcactccttaaattttttccttctactctttgaatccctcacaaacaagatgctctctct |
38306088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 38300366 - 38300169
Alignment:
| Q |
42 |
atcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgt |
141 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||| ||||||||| ||| || ||| | |||| ||| |
|
|
| T |
38300366 |
atcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgagttcactcttttaggcgtgtccagatgc |
38300267 |
T |
|
| Q |
142 |
aagcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctct |
238 |
Q |
| |
|
|||||||| |||| || |||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| |
|
|
| T |
38300266 |
aagcgaacggaacaatcaacaccaccaacctttgcaatacactccttaaatttttcccttccactctttgaatgcctcacaaacatgatgctatctct |
38300169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 38309014 - 38308820
Alignment:
| Q |
41 |
catcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatg |
140 |
Q |
| |
|
|||| ||||||||||||| ||||||||| || | | ||||||||||| |||| ||||| || ||||||||| ||| |||||||| || || | ||| |
|
|
| T |
38309014 |
catcgtcatacaagtgaagactttcaaatgcaagctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatgtctagatg |
38308915 |
T |
|
| Q |
141 |
taagcgaaccgaactat-aacaccaccaaccttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactct |
234 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
38308914 |
caaacgaacagaactatcaacaccaccaaccttttcaatgcactccttaaatttttccctgtgactctttgatcgcctcacaaacatgatgctct |
38308820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3545 times since January 2019
Visitors: 4037