View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_19 (Length: 257)
Name: NF0649_low_19
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 36 - 239
Target Start/End: Complemental strand, 21551111 - 21550908
Alignment:
| Q |
36 |
atacttatatgattccttggactattcatgtgagtcaagtcattaagttttagatcttgacacccaagaaattgaagaccctgcataggcatattatcaa |
135 |
Q |
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| T |
21551111 |
atacttatatgattccttggactattcctgtgagtcaagtcattaagttttagatcttgacacccaagaaattgaagagcctgcataggcatattatcaa |
21551012 |
T |
|
| Q |
136 |
ataattaattttatacttaatatttcaatgtagtttcaataatatatcaaattatataattggctatcatgttattcaacttacacttggcctatcttga |
235 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
21551011 |
ataatttattttatacttaatatttcaatgtagtttcaataatatatcaaattaaataattggctatcatgttattcaacttacagttggcctgtcttga |
21550912 |
T |
|
| Q |
236 |
tctc |
239 |
Q |
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|||| |
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| T |
21550911 |
tctc |
21550908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 38096712 - 38096595
Alignment:
| Q |
38 |
acttatatgattccttggactattcatgtgagtcaagtcattaagttttagatcttgacacccaagaaattgaagaccctgcataggcatattatcaaat |
137 |
Q |
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||||||||||||| | ||||||||||||||| |||||| ||||| ||||| ||||||| |||| ||| ||||| |||| ||| |||||||||||| | |
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| T |
38096712 |
acttatatgattcttcggactattcatgtgattcaagttgctaagtgttagagcttgacaatcaaggaatcgaagagcctgtatatgcatattatcaagt |
38096613 |
T |
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| Q |
138 |
aattaattttatacttaa |
155 |
Q |
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|||| || |||||||||| |
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| T |
38096612 |
aatttatgttatacttaa |
38096595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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