View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_20 (Length: 249)
Name: NF0649_low_20
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 3575625 - 3575821
Alignment:
| Q |
1 |
aaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatggga |
100 |
Q |
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| T |
3575625 |
aaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatggga |
3575724 |
T |
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| Q |
101 |
agaatcaccatgaggaaaacaaccaccaagaagaacgtaccttctggaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctctg |
197 |
Q |
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| T |
3575725 |
agaatcaccatgaggaaaacaaccaacaagaagaacgtcccttctggaagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctg |
3575821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 3585593 - 3585397
Alignment:
| Q |
1 |
aaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatggga |
100 |
Q |
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|||||||| ||||||| | ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3585593 |
aaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggcaatcaagctttccccttcgactccagaccttgtgatggga |
3585494 |
T |
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| Q |
101 |
agaatcaccatgaggaaaacaaccaccaagaagaacgtaccttctggaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctctg |
197 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3585493 |
agaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3585397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 3572351 - 3572537
Alignment:
| Q |
11 |
atggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacca |
110 |
Q |
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| T |
3572351 |
atggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattacca |
3572450 |
T |
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| Q |
111 |
tgaggaaaacaaccaccaagaagaacgtaccttctggaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctctg |
197 |
Q |
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| T |
3572451 |
tgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 3563646 - 3563840
Alignment:
| Q |
1 |
aaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatggga |
100 |
Q |
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|||||||| |||||| | ||||||||| |||||||||||||| || | || ||||||||||||||||||||||| ||||| | |||| ||| | ||||| |
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| T |
3563646 |
aaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccatccacccaagacattggggtggga |
3563745 |
T |
|
| Q |
101 |
agaatcaccatgaggaaaacaaccaccaagaagaacgtaccttctggaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctc |
195 |
Q |
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||| |||| ||||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3563746 |
agagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctc |
3563840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 3569294 - 3569488
Alignment:
| Q |
1 |
aaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatggga |
100 |
Q |
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|||||| | ||||||| | ||||||||| | |||||||||||| || | || |||||||||||||| |||||||| ||||||| |||| ||| | ||||| |
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| T |
3569294 |
aaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccactcaagacattggggtggga |
3569393 |
T |
|
| Q |
101 |
agaatcaccatgaggaaaacaaccaccaagaagaacgtaccttctggaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctc |
195 |
Q |
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||| |||| |||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| || |||||||| |||||||| |
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| T |
3569394 |
agagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctc |
3569488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 13275587 - 13275767
Alignment:
| Q |
10 |
aatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacc |
109 |
Q |
| |
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||||||| | ||||||||| |||||||||||||| || ||||||| ||||||||||| ||| ||| || || | |||||||| || ||||| ||||| |
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| T |
13275587 |
aatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagggtcacc |
13275686 |
T |
|
| Q |
110 |
atgaggaaaacaaccaccaagaagaacgtaccttctggaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattct |
194 |
Q |
| |
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|||| ||||||||||| ||||| || |||| ||||| || ||||| ||||||||||||||||| ||| |||| ||||||| |
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| T |
13275687 |
atga-aaaaacaaccac---aaagaaagtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattct |
13275767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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