View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0649_low_3 (Length: 572)

Name: NF0649_low_3
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0649_low_3
NF0649_low_3
[»] chr4 (7 HSPs)
chr4 (1-151)||(49158949-49159104)
chr4 (221-378)||(49158722-49158879)
chr4 (503-555)||(49158544-49158596)
chr4 (1-42)||(14043948-14043989)
chr4 (7-44)||(17115939-17115976)
chr4 (1-39)||(43148556-43148594)
chr4 (1-41)||(18862414-18862454)
[»] chr7 (5 HSPs)
chr7 (1-44)||(1295596-1295639)
chr7 (12-46)||(145674-145708)
chr7 (8-41)||(28065608-28065641)
chr7 (11-43)||(11827916-11827948)
chr7 (1-45)||(16984321-16984364)
[»] chr2 (2 HSPs)
chr2 (8-42)||(25770430-25770464)
chr2 (1-42)||(34608795-34608836)
[»] chr1 (1 HSPs)
chr1 (1-42)||(47542948-47542989)
[»] chr5 (1 HSPs)
chr5 (13-45)||(2598536-2598568)
[»] chr6 (2 HSPs)
chr6 (8-43)||(24359216-24359251)
chr6 (11-43)||(35018821-35018853)
[»] chr8 (3 HSPs)
chr8 (8-42)||(32158731-32158765)
chr8 (1-45)||(15892033-15892077)
chr8 (7-43)||(32035747-32035783)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 49159104 - 49158949
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaacaatatttaaaggaaa-----ttgtgcagttttgtgtcattttcacaagtca 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||    
T  49159104 agtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaacaatatttaaaggaaaggaaattgtgcagttttctgtcattttcacaagtca 49159005  T
Q  96 gaaacttggtctccacttcaatttctcttcttcatcgctaccagttactgccaagg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159004 gaaacttggtctccacttcaatttctcttcttcatcgctaccagttactgccaagg 49158949  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 221 - 378
Target Start/End: Complemental strand, 49158879 - 49158722
Alignment:
Q  221 gcttttctgttttgcttannnnnnnngtttcaccgcttaacgaaatttagggttcttaatttttactctgtaatttatgcatgttgagnnnnnnngagtg 320  Q
    ||||||||||||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  49158879 gcttttctgttttgcttattttttttgtttcacagcttaacgaaatttagggttcttaatttttactctgtaatttatgcatgttgagtttttttgagtg 49158780  T
Q  321 cattaccttagatggtgatgaatataatatattttggttcatgaatgaaatgctaccg 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49158779 cattaccttagatggtgatgaatataatatattttggttcatgaatgaaatgctaccg 49158722  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 49158596 - 49158544
Alignment:
Q  503 gtctggagtttgaagaatgtgtgttggtgtgttgacccttttgatgatgatgt 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49158596 gtctggagtttgaagaatgtgtgttggtgtgttgacccttttgatgatgatgt 49158544  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14043989 - 14043948
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattc 42  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  14043989 agttgggaatgagcaaaatgtgtttggtaaagagcagaattc 14043948  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 17115939 - 17115976
Alignment:
Q  7 gaatgagcaaaatgtgttgggtaaagagcagaattctt 44  Q
    |||||||||||||||||| |||||||||||||||||||    
T  17115939 gaatgagcaaaatgtgttaggtaaagagcagaattctt 17115976  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43148594 - 43148556
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaa 39  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  43148594 agttgggaatgagcaaaatgtattgggtaaagagcagaa 43148556  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18862414 - 18862454
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaatt 41  Q
    |||| ||||||||||||||||||| ||| ||||||||||||    
T  18862414 agttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1295596 - 1295639
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 44  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  1295596 agttaggaatgagcaaaatgtgttgggtaaagagcagaattctt 1295639  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 145708 - 145674
Alignment:
Q  12 agcaaaatgtgttgggtaaagagcagaattctttg 46  Q
    ||||||| |||||||||||||||||||||||||||    
T  145708 agcaaaaagtgttgggtaaagagcagaattctttg 145674  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 28065641 - 28065608
Alignment:
Q  8 aatgagcaaaatgtgttgggtaaagagcagaatt 41  Q
    |||||| |||||||||||||||||||||||||||    
T  28065641 aatgagtaaaatgtgttgggtaaagagcagaatt 28065608  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 11827916 - 11827948
Alignment:
Q  11 gagcaaaatgtgttgggtaaagagcagaattct 43  Q
    |||||||| ||||||||||||||||||||||||    
T  11827916 gagcaaaaagtgttgggtaaagagcagaattct 11827948  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16984364 - 16984321
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattcttt 45  Q
    |||| |||||||||||||||||||||||  |||||||||||||||    
T  16984364 agttgggaatgagcaaaatgtgttgggt-tagagcagaattcttt 16984321  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 25770430 - 25770464
Alignment:
Q  8 aatgagcaaaatgtgttgggtaaagagcagaattc 42  Q
    |||||||||||||||||||||||||||||||||||    
T  25770430 aatgagcaaaatgtgttgggtaaagagcagaattc 25770464  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34608795 - 34608836
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattc 42  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  34608795 agttgggaataagcaaaatgtgttgggtaaagagcaaaattc 34608836  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47542989 - 47542948
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattc 42  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  47542989 agttgggaatgagcaaaatgtgttggggaaagagcagaattc 47542948  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2598568 - 2598536
Alignment:
Q  13 gcaaaatgtgttgggtaaagagcagaattcttt 45  Q
    |||||||||||||||||||||||||||||||||    
T  2598568 gcaaaatgtgttgggtaaagagcagaattcttt 2598536  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 24359216 - 24359251
Alignment:
Q  8 aatgagcaaaatgtgttgggtaaagagcagaattct 43  Q
    |||||| |||||||||||||||||||||||||||||    
T  24359216 aatgagaaaaatgtgttgggtaaagagcagaattct 24359251  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 35018821 - 35018853
Alignment:
Q  11 gagcaaaatgtgttgggtaaagagcagaattct 43  Q
    |||||||||||||||||| ||||||||||||||    
T  35018821 gagcaaaatgtgttgggtgaagagcagaattct 35018853  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 32158731 - 32158765
Alignment:
Q  8 aatgagcaaaatgtgttgggtaaagagcagaattc 42  Q
    |||||||||||||||||||||||||||| ||||||    
T  32158731 aatgagcaaaatgtgttgggtaaagagcggaattc 32158765  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15892077 - 15892033
Alignment:
Q  1 agtttggaatgagcaaaatgtgttgggtaaagagcagaattcttt 45  Q
    |||| |||||||||| ||||||||||||||||| || ||||||||    
T  15892077 agttgggaatgagcataatgtgttgggtaaagaacataattcttt 15892033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 32035783 - 32035747
Alignment:
Q  7 gaatgagcaaaatgtgttgggtaaagagcagaattct 43  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  32035783 gaatgagcaaaatatgttggataaagagcagaattct 32035747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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