View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_30 (Length: 203)
Name: NF0649_low_30
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_30 |
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| [»] scaffold1031 (1 HSPs) |
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| [»] scaffold1037 (1 HSPs) |
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Alignment Details
Target: scaffold1031 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2498 - 2532
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2498 |
cattgagatttttcaaatacataaatgtagatcat |
2532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 216966 - 216932
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
216966 |
cattgagatttttcaaatacataaatgtagatcat |
216932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 693526 - 693492
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
693526 |
cattgagatttttcaaatacataaatgtagatcat |
693492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 697735 - 697701
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
697735 |
cattgagatttttcaaatacataaatgtagatcat |
697701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 730589 - 730555
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
730589 |
cattgagatttttcaaatacataaatgtagatcat |
730555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 854484 - 854450
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
854484 |
cattgagatttttcaaatacataaatgtagatcat |
854450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 2380 - 2413
Alignment:
| Q |
2 |
attgagatttttcaaatacataaatgtagatcat |
35 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
2380 |
attgagatttttcaaatacataaatgtagatcat |
2413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43737948 - 43737982
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
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|
| T |
43737948 |
cattgagatttttcaaatacataaatgtcgatcat |
43737982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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