View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0649_low_4 (Length: 530)

Name: NF0649_low_4
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0649_low_4
NF0649_low_4
[»] chr2 (2 HSPs)
chr2 (321-530)||(37215954-37216163)
chr2 (261-324)||(19713444-19713506)
[»] chr5 (2 HSPs)
chr5 (21-323)||(42862448-42862733)
chr5 (247-324)||(25043886-25043964)
[»] chr6 (1 HSPs)
chr6 (36-324)||(19814464-19814737)
[»] scaffold0657 (1 HSPs)
scaffold0657 (36-324)||(8299-8572)
[»] chr3 (2 HSPs)
chr3 (36-136)||(1203385-1203489)
chr3 (149-203)||(1203486-1203538)
[»] chr4 (1 HSPs)
chr4 (227-324)||(41951079-41951175)
[»] chr7 (1 HSPs)
chr7 (286-324)||(7646713-7646751)
[»] chr1 (1 HSPs)
chr1 (278-324)||(20600464-20600514)
[»] scaffold0150 (1 HSPs)
scaffold0150 (247-322)||(34805-34881)
[»] scaffold0028 (1 HSPs)
scaffold0028 (247-322)||(147443-147519)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 321 - 530
Target Start/End: Original strand, 37215954 - 37216163
Alignment:
Q  321 accacccttcacactaacaaccaccactactcacatgtcctcacttccctctctacaacccctttgacaacattaacaccttccttaccacacgcggact 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37215954 accacccttcacactaacaaccaccactactcacatgccctcacttccctctctacaacccctttgacaaaattaacaccttccttaccacacgcggact 37216053  T
Q  421 ccctttataacatgtaatcccacctctttctccacccttcatctcagataaaacaataacaataataaccttgcaacctttgtattttaccccaatagac 520  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37216054 ccctttataacatgtaatcccccctctttctccacccttcatcttagataaaacaataacaataataaccttgcaacctttgtattttaccccaatagac 37216153  T
Q  521 ttatcaatcc 530  Q
    ||||||||||    
T  37216154 ttatcaatcc 37216163  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 19713444 - 19713506
Alignment:
Q  261 catgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 324  Q
    |||||||||| |||   ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19713444 catgcgtcatgcaagatcgtcccaccccaaaa-tatttttccgaggattattgctctgatacca 19713506  T

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Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 42862733 - 42862448
Alignment:
Q  21 acatcatcaacaaaataaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacacca----actcaattgctgcaga 116  Q
    ||||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||||| | ||||||| |||| ||    ||||||||||||||||    
T  42862733 acatcataaacaaaataatctatatattagcaacctatatatccacaccatgaaagaattaaagagactatatgacaacaaactactcaattgctgcaga 42862634  T
Q  117 tttacgcttaacatcttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnn 216  Q
    || |||||||||||||                |||||||| |||||||||||||||||||||||||| |||||||||||||||||||    |||||||      
T  42862633 ttcacgcttaacatct----------------tcaagaagccatatatatacaagtacatttagatcatcaatttaataacagaaaaaatgtcaagacaa 42862550  T
Q  217 nnnnnnncaaatggatcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctc 316  Q
            ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||| ||||||| |||    
T  42862549 aaaa----aaaaggatcaaatcattcccaaacatcaatcaaaagcatgcgtcatacaaacacgtccca-ccctaaaatattagtccgaagattattactc 42862455  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 25043886 - 25043964
Alignment:
Q  247 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt--gtccgaggattattgctctgatacca 324  Q
    ||||||||||||| || |||||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  25043886 acatcaatcaaaa-cacgcgtcatacaagatcgtcccaccccaaaaatatttttgtccgaggattattgctctgatacca 25043964  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 19814464 - 19814737
Alignment:
Q  36 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 131  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  19814464 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 19814563  T
Q  132 ttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnnnnnnca-aatgg 230  Q
    |||||                |||||||||||||  |||||||||||||||| |||||||||||||||||||    |||||||          | ||||     
T  19814564 ttcaa----------------gaagtcatatata--caagtacatttagatcatcaatttaataacagaaaaatg-tcaagacaaagaaaataacaatga 19814644  T
Q  231 atcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 324  Q
    |||||||||||| || |||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19814645 atcaaatcattcacagacatcaatcaaa-gcatgcgtcataaaaacacgtcccaccccaaaaatattagtccgaggattattgctctgatacca 19814737  T

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Target: scaffold0657 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 8299 - 8572
Alignment:
Q  36 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 131  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  8299 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 8398  T
Q  132 ttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnnnnnnca-aatgg 230  Q
    |||||                ||| |||||||||  |||||||||||||||| |||||||||||||||||||    |||||||          | ||||     
T  8399 ttcaa----------------gaaatcatatata--caagtacatttagatcatcaatttaataacagaaaaatg-tcaagacaaagaaaataacaatga 8479  T
Q  231 atcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 324  Q
    |||||||||||| || |||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8480 atcaaatcattcacagacatcaatcaaa-gcatgcgtcataaaaacacgtcccaccccaaaaatattagtccgaggattattgctctgatacca 8572  T

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Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 1203385 - 1203489
Alignment:
Q  36 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 131  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  1203385 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 1203484  T
Q  132 ttcaa 136  Q
    |||||    
T  1203485 ttcaa 1203489  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 1203486 - 1203538
Alignment:
Q  149 tcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaa 203  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||    
T  1203486 tcaagaagtcatat--atacaagtaaatttagatcatcaatttaataacagaaaa 1203538  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 41951079 - 41951175
Alignment:
Q  227 atggatcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 324  Q
    |||||||||| ||||| || |  |||||||||||||||| ||||| |||  |||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  41951079 atggatcaaaacattcacacaactcaatcaaaagcatgcatcatataaaagcgtcccaccc-aaaaatatttgtccgaggactattgctcttatacca 41951175  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 7646751 - 7646713
Alignment:
Q  286 cccaaaaatatttgtccgaggattattgctctgatacca 324  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7646751 cccaaaaacatttgtccgaggattattgctctgatacca 7646713  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 20600464 - 20600514
Alignment:
Q  278 cgtcccaccccaaaaatattt----gtccgaggattattgctctgatacca 324  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||||||    
T  20600464 cgtcccaccccaaaaatatttttttgtccgaggattatcgctctgatacca 20600514  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 34805 - 34881
Alignment:
Q  247 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt---gtccgaggattattgctctgatac 322  Q
    |||||||||||| |||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||| ||||    
T  34805 acatcaatcaaa-gcatacatcatacgaattcgtcccaccc-aaaaatattttttgtccgaggattattgctctaatac 34881  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 147443 - 147519
Alignment:
Q  247 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt---gtccgaggattattgctctgatac 322  Q
    |||||||||||| |||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||| ||||    
T  147443 acatcaatcaaa-gcatacatcatacgaattcgtcccaccc-aaaaatattttttgtccgaggattattgctctaatac 147519  T

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