View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_5 (Length: 498)
Name: NF0649_low_5
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 40 - 436
Target Start/End: Complemental strand, 2048822 - 2048418
Alignment:
| Q |
40 |
gtgatcatgaacaacatagataggatgccgagtgtcaattcaagagttgaaccactgcaagtttttccaaccttcaccttttgtttatttgagttttcca |
139 |
Q |
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| T |
2048822 |
gtgatcatgaacaacatagataggatgccgagtgtcgattcaagagtcgaaccactgtaagtttttccaacctccaacttttgtttatttgagttttcca |
2048723 |
T |
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| Q |
140 |
caaagcaaatactcaataaaaagag---ggagagttgtaatctaaataaaat-aaaaagatagctagacataactacatgtaaatattcataaaattagg |
235 |
Q |
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| T |
2048722 |
caaagcaaatacccaataaaaagagggaggagagatgcaatctaaataaaataaaaaagatggctagacataactacatgtaaatattcataaaattagg |
2048623 |
T |
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| Q |
236 |
aacgtaatgatacggtgccagtgatctttgcatgtaattattcat-ataataaggcgcctaatgatgttgg------tgctagtgatctttgacatacag |
328 |
Q |
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| T |
2048622 |
aacataatgatatgacgctagtgatctttgcatgtaaatattcataataataaggtgcctaatgatgttggtgctactgctagtgatctttgatatacag |
2048523 |
T |
|
| Q |
329 |
gagcaaatattaggaattgtgtacatagattgaacaaaatatataacaaggtgggaagctgattttttattcaaggtggaaccaggtatatctaattcca |
428 |
Q |
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| T |
2048522 |
gagcaaatattaggaactgtgtacatagattgaacataatatataactagct-ggatgctg-ttttttattcaaagtggaacta-gtatatctaaattca |
2048426 |
T |
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| Q |
429 |
gagtataa |
436 |
Q |
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|||||||| |
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| T |
2048425 |
gagtataa |
2048418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 2054678 - 2054612
Alignment:
| Q |
348 |
tgtacatagattgaacaaaatatataacaaggtgggaagctgatt-ttttattcaaggtggaaccag |
413 |
Q |
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| T |
2054678 |
tgtacatagattgaacaaaatatataactagttaggatgctgatttttttattcaaggtggaaccag |
2054612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 2054793 - 2054722
Alignment:
| Q |
213 |
atgtaaatattcataaaattaggaacgtaatgatacggtgccagtgatctttgcatgtaattattcatataa |
284 |
Q |
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| T |
2054793 |
atgtaaatattcatataaataagaacatgatgatatggtgcaagtgatctttgcatgtaaatattcatataa |
2054722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 2062960 - 2062919
Alignment:
| Q |
336 |
tattaggaattgtgta--catagattgaacaaaatatataac |
375 |
Q |
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| T |
2062960 |
tattaggaattgtgtagacatagattgaacaaaatatataac |
2062919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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