View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0649_low_8 (Length: 377)
Name: NF0649_low_8
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_8 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 199 - 377
Target Start/End: Original strand, 1095705 - 1095883
Alignment:
| Q |
199 |
aagattgtcttcatatgtagtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1095705 |
aagattgtcttcatatgtagtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagttt |
1095804 |
T |
|
| Q |
299 |
aggacttaatctcaccttgcacaaaacatattgtgcttgtataaaaactttgctaagtatcatttctcaaagcttgttt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1095805 |
aggacttaatctcaccttgcacaaaacatattgtgcttgcataaaaactttgctaagtatcatttttcaaagcttgttt |
1095883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 1095562 - 1095721
Alignment:
| Q |
30 |
gttggttaaatgggactgcctctatttttgaattggaaagtgggaacgcttc-tttaacatatttggggttgtc-------aatattggtgataattctt |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1095562 |
gttggttaaatgagactgcctctatttttgaattggaaagtggggacgcttcctttaacatatttggggttgtcaaatgtcaatattggtgataattctt |
1095661 |
T |
|
| Q |
122 |
gcaaattatcattttaaaatccaatatttgatggtataagagaaagattgtcttcatatg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1095662 |
gcaaattatcattttaaaatccaatatttgatggtataagagaaagattgtcttcatatg |
1095721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 21715196 - 21715323
Alignment:
| Q |
229 |
tcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagtttaggacttaatctcaccttgcacaaaacata |
328 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||| | | || | ||||||| | ||||||||||| |||||||| |
|
|
| T |
21715196 |
tcttaggttttgagtgatgtcttatattcctcggatagttttagaagattgtattttgtttctctattgtaggactaattctcaccttgcttaaaacata |
21715295 |
T |
|
| Q |
329 |
ttgtgcttgtataaaaactttgctaagt |
356 |
Q |
| |
|
|| |||||| |||||| ||||||||||| |
|
|
| T |
21715296 |
ttttgcttgcataaaatctttgctaagt |
21715323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2534 times since January 2019
Visitors: 4010