View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0649_low_9 (Length: 375)
Name: NF0649_low_9
Description: NF0649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0649_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 94 - 375
Target Start/End: Complemental strand, 43203149 - 43202868
Alignment:
| Q |
94 |
ttttgagaaattctctcttcttgttgttcatcatctcacataactttcatcaacaccatcaatttctatctcactgtaatcacacccacataatttactt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
43203149 |
ttttgagaaattctctcttcttgttgttcatcatctcacataactttcatcaacaccatcaatttctatctcaccataatcacactcacataatttactt |
43203050 |
T |
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| Q |
194 |
ttcccattctttcttccatacccagatccaaattaagaaactcatattttctgtcaaacacggagggagatatgttagagattcgagtgggaaagagaag |
293 |
Q |
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| T |
43203049 |
ttcccattctttcttccatacccagatccaaattcagaaactcatattttctatcaaacacggagggagatatgttagagattcgagtgggaaagagaag |
43202950 |
T |
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| Q |
294 |
gagaaaatgaagaggtgtttatagagggaaaaaacgtcggtggctgtttgatttgttattgattttgatttgaatttttcat |
375 |
Q |
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| T |
43202949 |
aagaaaacgaagaggtgtttacagagggaaaaaatgtcggtggctatttaatttgttattgattttgatttgaatttttcat |
43202868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 199 - 336
Target Start/End: Original strand, 31844993 - 31845130
Alignment:
| Q |
199 |
attctttcttccatacccagatccaaattaagaaactcatattttctgtcaaacacggagggagatatgttagagattcgagtgggaaagagaaggagaa |
298 |
Q |
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||||||||||||||||| ||||||||| | | |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
31844993 |
attctttcttccatacctagatccaaactcataaacccatattttctgtcaaacacggagggagatatgtgagagactcgagtgggaaagagaaagagaa |
31845092 |
T |
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| Q |
299 |
aatgaagaggtgtttatagagggaaaaaacgtcggtgg |
336 |
Q |
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| T |
31845093 |
gatgaagaggtgtttaaagaggggaaaaacgtcggtgg |
31845130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 26630709 - 26630572
Alignment:
| Q |
199 |
attctttcttccatacccagatccaaattaagaaactcatattttctgtcaaacacggagggagatatgttagagattcgagtgggaaagagaaggagaa |
298 |
Q |
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||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||| |
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| T |
26630709 |
attctttcttccatacctagatccaaactcagaaacccatattttctgtcaaacacggagggagatatgtgagagacttgagtgggaaagagaaagagaa |
26630610 |
T |
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| Q |
299 |
aatgaagaggtgtttatagagggaaaaaacgtcggtgg |
336 |
Q |
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| T |
26630609 |
gatgaagaggtgtttaaagaggggaaaaacgccggtgg |
26630572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 249 - 344
Target Start/End: Complemental strand, 36846306 - 36846211
Alignment:
| Q |
249 |
aaacacggagggagatatgttagagattcgagtgggaaagagaaggagaaaatgaagaggtgtttatagagggaaaaaacgtcggtggctgtttga |
344 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| || ||||||||| |
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| T |
36846306 |
aaacacggagggagatatgtgagagactcgagtgggaaagagaaagagaagatgaagagatgtttaaagagggaaaaaacgtcagttgctgtttga |
36846211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 199 - 344
Target Start/End: Complemental strand, 43442298 - 43442153
Alignment:
| Q |
199 |
attctttcttccatacccagatccaaattaagaaactcatattttctgtcaaacacggagggagatatgttagagattcgagtgggaaagagaaggagaa |
298 |
Q |
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||||||||||||||||| |||||| || | ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
43442298 |
attctttcttccatacctagatccgaactcagaaatccatattttctgttaaacacggagggagatatgtgagagactcgagtgggaaagagaaagagaa |
43442199 |
T |
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| Q |
299 |
aatgaagaggtgtttatagagggaaaaaacgtcggtggctgtttga |
344 |
Q |
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||||||||||||||| |||||| ||||||| |||| ||||||||| |
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| T |
43442198 |
gatgaagaggtgtttaaagaggggaaaaacgccggttgctgtttga |
43442153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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