View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0650_high_1 (Length: 440)
Name: NF0650_high_1
Description: NF0650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0650_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 128 - 427
Target Start/End: Original strand, 5277381 - 5277681
Alignment:
| Q |
128 |
ggtggcatttagcttgggaaaataa-gtttttccctttgatgggaaagtggtgtcttcaccattgatttattgattattttattcagtggttgggattta |
226 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5277381 |
ggtggcatttagcatgggaagataaagttttttcccttgatggaaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
5277480 |
T |
|
| Q |
227 |
agagaggctacatgcaactaacttattgaaactgcattgatagattattannnnnnnnnnnnnnnncccaccttacttcagaaaccaactggtcttctct |
326 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||| || || |||||| | ||||||||| | |||||||||| |
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|
| T |
5277481 |
agagaggctacctgcaactaacttattggaactgcattgatagattctttttcggaaaaaaaagacccaaccttattgcagaaaccagcaggtcttctct |
5277580 |
T |
|
| Q |
327 |
ctcacccataaattttagtcaatgttcaannnnnnnnnnnnnnnnnntaatggtgggtcttttcttcacttgctcttactcgagtatctcttgatgatgt |
426 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
5277581 |
ctcacccataatttttagtcaatgttcaacaccaccaccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgt |
5277680 |
T |
|
| Q |
427 |
c |
427 |
Q |
| |
|
| |
|
|
| T |
5277681 |
c |
5277681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 127 - 427
Target Start/End: Original strand, 40726923 - 40727224
Alignment:
| Q |
127 |
tggtggcatttagcttgggaaaataa-gtttttccctttgatgggaaagtggtgtcttcaccattgatttattgattattttattcagtggttgggattt |
225 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
40726923 |
tggtggcatttagcttgggaagataaagttttttcccttgatgggaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattt |
40727022 |
T |
|
| Q |
226 |
aagagaggctacatgcaactaacttattgaaactgcattgatagattattannnnnnnnnnnnnnnncccaccttacttcagaaaccaactggtcttctc |
325 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| || || ||||| | ||||||||| ||||||||| |
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|
| T |
40727023 |
aagagaggctacctgcaactaacttattggaactgcattgatagattcttttttggaaaaaaaagacccaaccttgttgcagaaaccagtaggtcttctc |
40727122 |
T |
|
| Q |
326 |
tctcacccataaattttagtcaatgttcaannnnnnnnnnnnnnnnnntaatggtgggtcttttcttcacttgctcttactcgagtatctcttgatgatg |
425 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
40727123 |
tctcacccataatttctagtcaatgttcaacaccaccaccgccgccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatg |
40727222 |
T |
|
| Q |
426 |
tc |
427 |
Q |
| |
|
|| |
|
|
| T |
40727223 |
tc |
40727224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 128 - 427
Target Start/End: Original strand, 53869606 - 53869906
Alignment:
| Q |
128 |
ggtggcatttagcttgggaaaataa-gtttttccctttgatgggaaagtggtgtcttcaccattgatttattgattattttattcagtggttgggattta |
226 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
53869606 |
ggtggcatttagcatgggaagataaagttttttcccttgatggaaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
53869705 |
T |
|
| Q |
227 |
agagaggctacatgcaactaacttattgaaactgcattgatagattattannnnnnnnnnnnnnnncccaccttacttcagaaaccaactggtcttctct |
326 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||| || || |||||| | ||||||||| | ||||||||| |
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|
| T |
53869706 |
agagaggctacctgcaactaacttattggaactgcattgatagattctttttcggaaaaaaaagacccaaccttattgcagaaaccagcaggtcttctca |
53869805 |
T |
|
| Q |
327 |
ctcacccataaattttagtcaatgttcaannnnnnnnnnnnnnnnnntaatggtgggtcttttcttcacttgctcttactcgagtatctcttgatgatgt |
426 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
53869806 |
ctcacccataatttttagtcaatgttcaacaccaccaccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgt |
53869905 |
T |
|
| Q |
427 |
c |
427 |
Q |
| |
|
| |
|
|
| T |
53869906 |
c |
53869906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 128 - 272
Target Start/End: Complemental strand, 625544 - 625399
Alignment:
| Q |
128 |
ggtggcatttagcttgggaaaataa-gtttttccctttgatgggaaagtggtgtcttcaccattgatttattgattattttattcagtggttgggattta |
226 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
625544 |
ggtggcatttagcttgggaagataaagttttttcccttgatggaaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
625445 |
T |
|
| Q |
227 |
agagaggctacatgcaactaacttattgaaactgcattgatagatt |
272 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
625444 |
agagaggctgcctgcaactaacttattggaactgcattgatagatt |
625399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 625285 - 625232
Alignment:
| Q |
374 |
taatggtgggtcttttcttcacttgctcttactcgagtatctcttgatgatgtc |
427 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
625285 |
taatggtggctcttttcttcacttgctcttactcaagtatctcttgaagatgtc |
625232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 625354 - 625304
Alignment:
| Q |
305 |
cagaaaccaactggtcttctctctcacccataaattttagtcaatgttcaa |
355 |
Q |
| |
|
||||||||| | | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
625354 |
cagaaaccagcagttcttctctctcacccataatttttagtcaatgttcaa |
625304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 51975400 - 51975489
Alignment:
| Q |
179 |
gtcttcaccattgatttattgattattttattcagtggttgggatttaagagaggctacatgcaactaacttattgaaactgcattgata |
268 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| | || | |||||||||| ||||||||||| ||| |||||| ||| |||||||| |
|
|
| T |
51975400 |
gtctccaccattgatatattgattattttattaaacggctaggatttaagaagggctacatgcatttaatttattgggactacattgata |
51975489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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