View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0650_high_4 (Length: 313)

Name: NF0650_high_4
Description: NF0650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0650_high_4
NF0650_high_4
[»] chr4 (4 HSPs)
chr4 (1-184)||(11581175-11581358)
chr4 (8-169)||(3693067-3693225)
chr4 (29-117)||(41147891-41147979)
chr4 (8-44)||(19497480-19497516)
[»] chr7 (4 HSPs)
chr7 (1-176)||(13807877-13808052)
chr7 (1-117)||(13760897-13761012)
chr7 (95-184)||(1718417-1718506)
chr7 (11-52)||(44362226-44362267)
[»] chr8 (2 HSPs)
chr8 (1-169)||(24788438-24788606)
chr8 (11-52)||(20129804-20129845)
[»] chr1 (5 HSPs)
chr1 (8-48)||(10491303-10491343)
chr1 (113-175)||(39037905-39037967)
chr1 (137-169)||(10491432-10491464)
chr1 (1-41)||(31403981-31404021)
chr1 (95-183)||(46269064-46269152)
[»] chr2 (2 HSPs)
chr2 (1-42)||(36400498-36400539)
chr2 (5-42)||(40990811-40990848)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-45)||(25803-25847)
[»] chr6 (1 HSPs)
chr6 (1-45)||(24395719-24395763)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 11581358 - 11581175
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaacacagtttccactccttattctctccttgaaagagttaaggtaaattcattgttatgg 100  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11581358 ttggatgatttggaaggaaaggaataactgtgtattccaaaacacaatttccactccttattctctccttgaaagagttaaggtaaattcattgttatgg 11581259  T
Q  101 ttgaaatttaaacaggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatgcgtgttatgatgtaa 184  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |  |||||||||||| |||| |||||||||    
T  11581258 ttgaaatttaaacatgtagcgttcaattatagctaccatgattggtggaaacatctcattctttgtatgggtgtcatgatgtaa 11581175  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 3693225 - 3693067
Alignment:
Q  8 atttggaaggaaaggaataatcgtgtattccaaaacacagtttccactccttattctctccttgaaagagttaaggtaaattcattgttatggttgaaat 107  Q
    ||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||   |||||||  |||||||| ||||| || |||||||||||||    
T  3693225 atttggaagaagagaaataatcgtgtattccaaaacacggtttccactccttattct---cttgaaaaggttaaggttaattctttcttatggttgaaat 3693129  T
Q  108 ttaaacaggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatg 169  Q
     ||| ||||| ||||| ||||||| ||| ||||||||| |||| ||||| ||| ||||||||    
T  3693128 ctaatcaggtggcgttcaattataactaacatgattggtggaatcaccccattgtttgtatg 3693067  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 41147891 - 41147979
Alignment:
Q  29 cgtgtattccaaaacacagtttccactccttattctctccttgaaagagttaaggtaaattcattgttatggttgaaatttaaacaggt 117  Q
    ||||| |||||||| ||  |||| | |||||| |||||| ||||||  |||||  |||||||||| ||||||||||||| |||||||||    
T  41147891 cgtgttttccaaaatacgatttcaaatccttactctctcattgaaaaggttaaattaaattcattcttatggttgaaatctaaacaggt 41147979  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 19497516 - 19497480
Alignment:
Q  8 atttggaaggaaaggaataatcgtgtattccaaaaca 44  Q
    |||||||||||||||||| | ||||||||||||||||    
T  19497516 atttggaaggaaaggaatcaccgtgtattccaaaaca 19497480  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 13808052 - 13807877
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaacacagtttccactccttattctctccttgaaagagttaaggtaaattcattgttatgg 100  Q
    |||||||||||||||||||  ||| ||  | ||||||||||| ||| ||||| |||||| ||||||| |||||  ||| ||| ||||||| || ||||||    
T  13808052 ttggatgatttggaaggaattgaacaactgggtattccaaaatacactttccgctccttcttctctcattgaacaagtaaagttaaattcctttttatgg 13807953  T
Q  101 ttgaaatttaaacaggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatgcgtgtta 176  Q
    |||||||  ||||| || |||||   |||||| || ||||||||| |||||||||  |||||||||||| ||||||    
T  13807952 ttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaacacctcattctttgtatgggtgtta 13807877  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 13760897 - 13761012
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaacacagtttccactccttattctctccttgaaagagttaaggtaaattcattgttatgg 100  Q
    |||| |||| || |||||||||||||| ||||| || ||||| |||||||| | || || |  |||| |||||| ||||||| |||||||||| ||||||    
T  13760897 ttgggtgatatgaaaggaaaggaataaccgtgtctttcaaaatacagtttcta-tctttttattctcattgaaaaagttaagctaaattcattcttatgg 13760995  T
Q  101 ttgaaatttaaacaggt 117  Q
    |||||||  ||||||||    
T  13760996 ttgaaatcaaaacaggt 13761012  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 1718417 - 1718506
Alignment:
Q  95 ttatggttgaaatttaaacaggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatgcgtgttatgatgtaa 184  Q
    ||||||||||  | ||||||||| || ||| |||||   || ||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  1718417 ttatggttgaggtctaaacaggtggcttttgattattcttatcatgattggtggaaacaccctattcattgtatgggtgttatgttgtaa 1718506  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 44362267 - 44362226
Alignment:
Q  11 tggaaggaaaggaataatcgtgtattccaaaacacagtttcc 52  Q
    ||||||||||||||| |||||||||||||||| || ||||||    
T  44362267 tggaaggaaaggaatgatcgtgtattccaaaatacggtttcc 44362226  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 24788606 - 24788438
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaacacagtttccactccttattctctccttgaaagagttaaggtaaattcattgttatgg 100  Q
    |||| ||||||||||||| ||||||||  |  | || || ||||| ||||| ||||| | | ||||| |||||| ||| ||| | |||||||| ||||||    
T  24788606 ttgggtgatttggaaggagaggaataactgaatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaattcattcttatgg 24788507  T
Q  101 ttgaaatttaaacaggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatg 169  Q
    |||||||  ||||||||| | |||  |||||| ||||| || ||| ||| ||| || ||||||||||||    
T  24788506 ttgaaatcgaaacaggtaacttttgtttatagttaccacgactggtggagacaacccattctttgtatg 24788438  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 20129804 - 20129845
Alignment:
Q  11 tggaaggaaaggaataatcgtgtattccaaaacacagtttcc 52  Q
    ||||||||||||||| |||||||||||||||| || ||||||    
T  20129804 tggaaggaaaggaatgatcgtgtattccaaaatacggtttcc 20129845  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 10491303 - 10491343
Alignment:
Q  8 atttggaaggaaaggaataatcgtgtattccaaaacacagt 48  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  10491303 atttggaaggaaaggaataaccgtgtattccaaaatacagt 10491343  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 39037967 - 39037905
Alignment:
Q  113 caggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatgcgtgtt 175  Q
    ||||| ||||| | ||||||||||||||||||| |||| ||||| |||||||| ||| |||||    
T  39037967 caggtggcgttcacttatagctaccatgattggtggaatcaccccattctttgaatgggtgtt 39037905  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 10491432 - 10491464
Alignment:
Q  137 catgattggaggaaacaccctattctttgtatg 169  Q
    ||||||||| |||||||||||||||||||||||    
T  10491432 catgattggtggaaacaccctattctttgtatg 10491464  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31403981 - 31404021
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaa 41  Q
    |||||||||||||||||| |||||||| || ||||||||||    
T  31403981 ttggatgatttggaaggataggaataaccgcgtattccaaa 31404021  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 46269152 - 46269064
Alignment:
Q  95 ttatggttgaaatttaaacaggtagcgtttaattatagctaccatgattggaggaaacaccctattctttgtatgcgtgttatgatgta 183  Q
    |||||||||| || ||||||||| || |||  ||||   || ||||||||| ||||||||||||||| ||||||| ||| |||| ||||    
T  46269152 ttatggttgagatctaaacaggtggcttttgcttattcttatcatgattggtggaaacaccctattcattgtatgggtgctatgttgta 46269064  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36400539 - 36400498
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaa 42  Q
    |||| |||| |||||||| |||||||||||||||||||||||    
T  36400539 ttgggtgatatggaaggagaggaataatcgtgtattccaaaa 36400498  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 40990811 - 40990848
Alignment:
Q  5 atgatttggaaggaaaggaataatcgtgtattccaaaa 42  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  40990811 atgatttggaaggagaggaataaccgtgtattccaaaa 40990848  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25803 - 25847
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaacac 45  Q
    |||||||||||||||||||||||||  || ||| |||||||||||    
T  25803 ttggatgatttggaaggaaaggaatggtcatgttttccaaaacac 25847  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24395719 - 24395763
Alignment:
Q  1 ttggatgatttggaaggaaaggaataatcgtgtattccaaaacac 45  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||    
T  24395719 ttgggtgatttggaaggaaaggaatgatcatgttttccaaaacac 24395763  T

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