View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0650_low_4 (Length: 359)
Name: NF0650_low_4
Description: NF0650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0650_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 43574757 - 43574407
Alignment:
| Q |
1 |
gtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgct |
100 |
Q |
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| T |
43574757 |
gtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgct |
43574658 |
T |
|
| Q |
101 |
gctatagttgtatatgacattacaagcatggtaactaaaatccactttataagtgatatttatggcagcaatttataggcaatcatttttatttagcttg |
200 |
Q |
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| T |
43574657 |
gctatagttgtatatgacattacaagcatggtaactaaaatccactttataagtgatatttatggtagcaatttataggcaatcatttttatttagcttg |
43574558 |
T |
|
| Q |
201 |
tgatgattagttgtttgaaatatgtacttgaaagcaaagaattttcgttcacatgacctgtcacgaagctgttcaataaagataacaataattgattgtc |
300 |
Q |
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| T |
43574557 |
tgatgattagttgtttgaaatatgtacttgaaagcaaagaattttcgttcgcatgacctgtcacgaagctgttcaataaagataacaataattgattgtc |
43574458 |
T |
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| Q |
301 |
atgaatgatatataatagaatgtgtaatgtttatgttattgcatctgtgct |
351 |
Q |
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| T |
43574457 |
atgaatgatatataatagaatgtgtaatgtttatgttattgcatccgtgct |
43574407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 43920460 - 43920386
Alignment:
| Q |
10 |
tgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtatta |
84 |
Q |
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| T |
43920460 |
tgaagccactgtgaagtttgacatatgggacacagcaggacaagaacgatatcatagtttggctcctatgtatta |
43920386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 28988483 - 28988577
Alignment:
| Q |
26 |
tttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacat |
120 |
Q |
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||||| || ||||||||||||||||||||| ||||||| || ||||||||||||||||| | ||| | |||||||||||| |||| |||||||| |
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| T |
28988483 |
tttgagatttgggacacagcagggcaagaaagataccatagcttggctcccatgtattacagaggcgcagctgctgctataattgtctatgacat |
28988577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 32677496 - 32677613
Alignment:
| Q |
6 |
taaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgctgctat |
105 |
Q |
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||||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||||| || || ||||||||||| ||| | ||| ||||||||||||| |
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| T |
32677496 |
taaatgacgccacagtgaaatttgagatttgggacacagcaggacaagagagataccatagcttagctcccatgtactatagaggcgctgctgctgctat |
32677595 |
T |
|
| Q |
106 |
agttgtatatgacattac |
123 |
Q |
| |
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|||| ||||| ||||| |
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| T |
32677596 |
cattgtctatgatattac |
32677613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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