View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0650_low_8 (Length: 256)
Name: NF0650_low_8
Description: NF0650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0650_low_8 |
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| [»] scaffold0428 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33260364 - 33260590
Alignment:
| Q |
1 |
ttgttaaatagcagcgctattttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33260364 |
ttgttaaatagcagcgctattttgctacagcgagtggaatatgaacaaattgctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagca |
33260463 |
T |
|
| Q |
101 |
tctatggtggcgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
200 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33260464 |
tctatagtggtgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
33260563 |
T |
|
| Q |
201 |
aaaatgagttaagcataacctttattc |
227 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
33260564 |
aaaatgaattaagcataacctttattc |
33260590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33282660 - 33282886
Alignment:
| Q |
1 |
ttgttaaatagcagcgctattttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagca |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33282660 |
ttgttaaatagcagcgctatattgctacagcgagtggactatgaacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagca |
33282759 |
T |
|
| Q |
101 |
tctatggtggcgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33282760 |
tctatagtggcgctataaaactattgtgtagcggtaagaaattgttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
33282859 |
T |
|
| Q |
201 |
aaaatgagttaagcataacctttattc |
227 |
Q |
| |
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|||||| ||||||||||||| ||||| |
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| T |
33282860 |
aaaatgcattaagcataacctatattc |
33282886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 33386143 - 33386327
Alignment:
| Q |
23 |
tgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaact |
122 |
Q |
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||||| || ||||||||| |||||||||| |||||||||| |||||||||| || || ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
33386143 |
tgctatagagagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaact |
33386242 |
T |
|
| Q |
123 |
attgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatga |
207 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||| ||||| ||||||| |
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| T |
33386243 |
attgtgtagcggtaacaaattgttactttcggcgatacaagaatgacaacactaattcagtcaagcaagcatgatttaaaaatga |
33386327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 2732973 - 2733032
Alignment:
| Q |
75 |
ttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaactattgtgtagcgg |
134 |
Q |
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||||| ||||||||||| |||||||| |||| | |||||||||| |||||||| |||||| |
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| T |
2732973 |
ttagtacaaaatgttgtcaaatagcagctatagaggcgctataatactattgtatagcgg |
2733032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11592 - 11366
Alignment:
| Q |
1 |
ttgttaaatagcagcgctattttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagca |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592 |
ttgttaaatagcagcgctatattgctacagcgagtggactatgaacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagca |
11493 |
T |
|
| Q |
101 |
tctatggtggcgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11492 |
tctatagtggcgctataaaactattgtgtagcggtaagaaattgttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
11393 |
T |
|
| Q |
201 |
aaaatgagttaagcataacctttattc |
227 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
11392 |
aaaatgaattaagcataacctttattc |
11366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 4441 - 4646
Alignment:
| Q |
22 |
ttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
4441 |
ttgctacagcgagtggaatatgaacaaattgctattgctcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggtgctataaaac |
4540 |
T |
|
| Q |
122 |
tattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgagttaagcataacct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4541 |
tattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacct |
4640 |
T |
|
| Q |
222 |
ttattc |
227 |
Q |
| |
|
||||| |
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|
| T |
4641 |
atattc |
4646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17443067 - 17442850
Alignment:
| Q |
1 |
ttgttaaatagcagcgctattttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagca |
100 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17443067 |
ttgttaaatagcagccctatagtgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagca |
17442968 |
T |
|
| Q |
101 |
tctatggtggcgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttg |
200 |
Q |
| |
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||||| ||||||||||||||||||||||| | | || ||| ||||||||| | |||||| |||||||||||||||||||| |||| |||||||||| | |
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| T |
17442967 |
tctatagtggcgctataaaactattgtgt-gaaggaacaaacagttactttcagggatacatgattgacaacactgattcaaacaagaaagcaggattgg |
17442869 |
T |
|
| Q |
201 |
aaaatgagttaagcataac |
219 |
Q |
| |
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||||||| ||||||||||| |
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|
| T |
17442868 |
aaaatgaattaagcataac |
17442850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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