View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0650_low_9 (Length: 251)

Name: NF0650_low_9
Description: NF0650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0650_low_9
NF0650_low_9
[»] scaffold0001 (1 HSPs)
scaffold0001 (22-240)||(135249-135467)
[»] chr8 (3 HSPs)
chr8 (22-240)||(27011133-27011351)
chr8 (22-181)||(21286492-21286651)
chr8 (160-237)||(22726789-22726866)
[»] chr7 (2 HSPs)
chr7 (22-240)||(18403556-18403774)
chr7 (24-229)||(19391922-19392125)
[»] chr5 (1 HSPs)
chr5 (22-240)||(20935508-20935726)
[»] chr4 (4 HSPs)
chr4 (22-240)||(15457965-15458183)
chr4 (22-240)||(15818608-15818826)
chr4 (22-240)||(18114659-18114877)
chr4 (22-217)||(18159653-18159848)
[»] chr3 (2 HSPs)
chr3 (22-240)||(12303427-12303645)
chr3 (29-82)||(1928914-1928967)
[»] scaffold0264 (1 HSPs)
scaffold0264 (22-235)||(7291-7504)
[»] chr6 (1 HSPs)
chr6 (22-237)||(27522101-27522316)
[»] chr1 (1 HSPs)
chr1 (22-240)||(28138339-28138557)
[»] scaffold0207 (1 HSPs)
scaffold0207 (22-237)||(29593-29808)


Alignment Details
Target: scaffold0001 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 135249 - 135467
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
135249 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 135348  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
135349 ccagatactttggacagtttcgcttccaatgcccagcgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 135448  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
135449 tgatggcttggcaacagct 135467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 27011133 - 27011351
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27011133 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 27011232  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
27011233 ccagatactttggacagtttcgcttccaatgcccagcgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 27011332  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
27011333 tgatggcttggcaacagct 27011351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 21286492 - 21286651
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
21286492 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaatatttccattcttcttatctt 21286591  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttac 181  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
21286592 ccagatactttggacagtttcgcttccaatgcccagtgttgttgcagtagaagcacttac 21286651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 22726866 - 22726789
Alignment:
160 ttgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagttgatggcttggcaaca 237  Q
    ||||||||| |||||||||| || |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
22726866 ttgttgcagcagaagcacttgccctccttagcaacgcctccagtaggcttcaaagctttggttgatggcttggcaaca 22726789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 18403774 - 18403556
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18403774 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 18403675  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
18403674 ccagatactttggacagtttcgcttccaatgcccagcgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 18403575  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
18403574 tgatggcttggcaacagct 18403556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 19392125 - 19391922
Alignment:
24 tccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatcttcc 123  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||| |||||||| || |||| ||||||| ||||||||||||    
19392125 tccagtatctaatacccatgatgtagaagtagacatattaatttatata--aaaaatatctgaagaagtagaagcaacagttccattattcttatcttcc 19392028  T
124 agatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagttg 223  Q
    ||||| |||||  || ||||||||||||| |  |  ||   |||||||||||| || || ||||||||||| | ||  |||||||||||||||||  |||    
19392027 agatattttgggcagcttcgcttccaatgtctggttttaccgcagtagaagcaatttccctccttagccacacatcctgtaggcttcaaagctttgattg 19391928  T
224 atggct 229  Q
    ||||||    
19391927 atggct 19391922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 20935726 - 20935508
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20935726 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 20935627  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||    
20935626 ccagatactttggacagtttcgcttccaatgcccagtgttgttgcagtagaagcacttgccatccttagccacgcctccagtaggcttcaaagctttggt 20935527  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
20935526 tgatggcttggcaacagct 20935508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 15458183 - 15457965
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15458183 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 15458084  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
15458083 ccagatactttggacagtttcgcttccaatgcccagtgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 15457984  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
15457983 tgatggcttggcaacagct 15457965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 15818826 - 15818608
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15818826 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 15818727  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
15818726 ccagatactttggacagtttcgcttccaatgcccagcgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 15818627  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
15818626 tgatggcttggcaacagct 15818608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 18114659 - 18114877
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18114659 catccagtatctaatacccatgatgtagaagtagatatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 18114758  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
18114759 ccagatactttggacagtttcgcttccaatgcccagtgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 18114858  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
18114859 tgatggcttggcaacagct 18114877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 18159848 - 18159653
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
18159848 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaatatttccattcttcttatctt 18159749  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctt 217  Q
    |||||||||||||| ||||||||||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
18159748 ccagatactttggacagtttcgcttccaatgccctgtgttgttgcaatagaagcacttaccatccttagccacgcctctagtaggcttcaaagctt 18159653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 12303645 - 12303427
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
12303645 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttgtctt 12303546  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
12303545 ccagatactttggacagtttcgcttccaatgcccagtgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 12303446  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
12303445 tgatggcttggcaacagct 12303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 1928914 - 1928967
Alignment:
29 tatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatac 82  Q
    ||||||||||||||||| ||||| |||| | |||||||||||||| || |||||    
1928914 tatctaatacccatgatatagaaatagataaattaatttctataagaataatac 1928967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 7291 - 7504
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7291 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 7390  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
     ||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
7391 acagatactttggacagtttcgcttccaatgcccagtgttgttgcaatagaagcacttaccatccttagccacgcctccagtaggcttcaaagctttggt 7490  T
222 tgatggcttggcaa 235  Q
    ||||||||||||||    
7491 tgatggcttggcaa 7504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 27522101 - 27522316
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27522101 catccagtatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 27522200  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||| ||||||||||||||  |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| ||    
27522201 ccagatactttggatagtttcacttccaatgcccagcgttgttgcaatagaagcacttatcatccttagccacgcctccagtaggcttcaaagctttggt 27522300  T
222 tgatggcttggcaaca 237  Q
    ||||||||||||||||    
27522301 tgatggcttggcaaca 27522316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 28138339 - 28138557
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
28138339 catccagtatctaatacccatgatgtagaagtagacatattaatttctataaaaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 28138438  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||    
28138439 ccagatactttggacagtttcgcttccaatgcccagtgttgttgaagtagaagcacttgccatccttacccacgcctccagtaggcttcaaagctttggt 28138538  T
222 tgatggcttggcaacagct 240  Q
    |||||||||||||||||||    
28138539 tgatggcttggcaacagct 28138557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 29808 - 29593
Alignment:
22 catccaatatctaatacccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagtaggaacatttccattcttcttatctt 121  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
29808 catccagtatctaatatccatgatgtagaagtagacatattaatttctataacaaaaatacctgcagaagtagttggaacatttccattcttcttatctt 29709  T
122 ccagatactttggaaagtttcgcttccaatgcccagaattgttgcagtagaagcacttaccatccttagccacgcctctagtaggcttcaaagctttagt 221  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||    
29708 ccagatactttggacagtttcgcttccaatgccctgtattgttgcagtagaagcacttgccctccttagccacgcctccagtaggcttcaaagctttggt 29609  T
222 tgatggcttggcaaca 237  Q
    ||||||||||||||||    
29608 tgatggcttggcaaca 29593  T

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