View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0651_high_1 (Length: 295)
Name: NF0651_high_1
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0651_high_1 |
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| [»] scaffold0951 (1 HSPs) |
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Alignment Details
Target: scaffold0951 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0951
Description:
Target: scaffold0951; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 270 - 167
Alignment:
| Q |
67 |
aaatgtcattggaacttagcagttgaatttctgacttaataaaatcattgtacattttcactctttttattacatcttgcaagtttcccttgtcgaaatc |
166 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||| ||||||| || ||| |||||||||||||||||||||| |
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| T |
270 |
aaatgtcattggaacttagcacttgaatttctgacttaataaaatcattgtgcattctgactgtttttatcacttctcgcaagtttcccttgtcgaaatc |
171 |
T |
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| Q |
167 |
atgt |
170 |
Q |
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|||| |
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| T |
170 |
atgt |
167 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 20444662 - 20444589
Alignment:
| Q |
126 |
actctttttattacatcttgcaagtttcccttgtcgaaatcatgtctctaattatgacagcttcagtaacattt |
199 |
Q |
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| T |
20444662 |
actctttttattacatattgcaagtttcccttgtcgaaatcatgtctataattatgacagcttcagtaacattt |
20444589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 20280015 - 20279910
Alignment:
| Q |
68 |
aatgtcattggaacttagcagtt-gaatttctgacttaataaaatcattgtacattttcactctttttattacatcttgcaagtttcccttgtcgaaatc |
166 |
Q |
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||||||||| ||||||||||||| || ||||||| |||||||||||||||| |||| | ||| |||||||||||| ||||||||||||||| |||||||| |
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| T |
20280015 |
aatgtcatttgaacttagcagtttgagtttctgagttaataaaatcattgtgcattctgactgtttttattacattttgcaagtttcccttctcgaaatc |
20279916 |
T |
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| Q |
167 |
atgtct |
172 |
Q |
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|||||| |
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| T |
20279915 |
atgtct |
20279910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 20432557 - 20432484
Alignment:
| Q |
126 |
actctttttattacatcttgcaagtttcccttgtcgaaatcatgtctctaattatgacagcttcagtaacattt |
199 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
20432557 |
actcttattattacatattgcaagtttcccttgtcgaaatcatgtctataattatgacagcttcagtcacattt |
20432484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 20451769 - 20451690
Alignment:
| Q |
103 |
taataaaatcattgtacattttcactctttttattacatcttgcaagtttcccttgtcgaaatcatgtctctaattatga |
182 |
Q |
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| T |
20451769 |
taataatatcattgtgcattctgactgtttttatcacttgtcgcaagtttcccttgtcgaaatcatgtctataattatga |
20451690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 20441030 - 20440989
Alignment:
| Q |
208 |
gttgcccggtcatgtcataactatactcaggtgttcatctca |
249 |
Q |
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| T |
20441030 |
gttgcccggtcatgtcataactatactcaggtgttcagctca |
20440989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 20463323 - 20463274
Alignment:
| Q |
67 |
aaatgtcattggaacttagcagttgaatttctgacttaataaaatcattg |
116 |
Q |
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||||||||||||||||||||| |||| |||||||||| |||||| ||||| |
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| T |
20463323 |
aaatgtcattggaacttagcacttgagtttctgactttataaaaacattg |
20463274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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