View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0651_low_10 (Length: 256)
Name: NF0651_low_10
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0651_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 33214125 - 33213983
Alignment:
| Q |
85 |
tagctaaatatatagttagtgattacaccatatataaaaaagtacccactatcgaggtcaagtacgaaactattcgaaatcctactaatacatcgttgat |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33214125 |
tagctaaatatatagttagtgattacaccatatataaaaaagtatccactatcgaggtcaagtacgaaactattcgaaatcctactaatacatcgttgat |
33214026 |
T |
|
| Q |
185 |
cacaatacttgctcatgagttatgcataacatagtttaattaa |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33214025 |
cacaagacttgctcatgagttatgcataacatagtttaattaa |
33213983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 33214204 - 33214167
Alignment:
| Q |
55 |
ggtcaaataaatagatatttcattcattgatagctaaa |
92 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33214204 |
ggtcaaataaataggtatttcattcattgatagctaaa |
33214167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 42319261 - 42319351
Alignment:
| Q |
55 |
ggtcaaataaatagatatttcattcattgatagctaaatatatagttagtgattacaccatatataaaaaagtacccactatcgaggtcaagtac |
149 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| |||| |||||||||||| | |||| |||||| | |||||| | |||||||||| |
|
|
| T |
42319261 |
ggtcaaacaagtagatatttcattcattgatagctaa----atagctagtgattacactgtgtatagaaaagtgctcactattggggtcaagtac |
42319351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3177 times since January 2019
Visitors: 4029