View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0651_low_11 (Length: 254)
Name: NF0651_low_11
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0651_low_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 39049388 - 39049617
Alignment:
| Q |
26 |
atcaaatatatgtatgtttctacaataccatatcgtattaatcacattgataatggttgcaatgaccaccactttatgttacaatgatcaagatttatta |
125 |
Q |
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| T |
39049388 |
atcaaatatatgtatgtttctactataccatatcgtattaatcacattgataatggttgcaatgacaaccactttatgttacaatgatcaagatttatta |
39049487 |
T |
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| Q |
126 |
caagttttaatggcaatatgcacattact-gtgtccatctacatattaaaaatgaaagtaatccaaccagaagttgacctgcaaagtcatagtcaaaaaa |
224 |
Q |
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| T |
39049488 |
caaattttaatcacaatatgcacattactggtgtccatctacatattaaaaatgaaagtaatccaacctgaagttgacctgcaaagtcacattcaaaaaa |
39049587 |
T |
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| Q |
225 |
caaatgtttgttagattcttatggtgtaaa |
254 |
Q |
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| T |
39049588 |
caaatgtttgttagattcttatggtgtaaa |
39049617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 39047076 - 39047305
Alignment:
| Q |
26 |
atcaaatatatgtatgtttctacaataccatatcgtattaatcacattgataatggttgcaatgaccaccactttatgttacaatgatcaagatttatta |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
39047076 |
atcaaatatatgtatgtttctacaataccatatcgtattaatcacattgataatggttgcaatgacacccactttatattacggtgatcaagatttatta |
39047175 |
T |
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| Q |
126 |
caagttttaatggcaatatgcacattact-gtgtccatctacatattaaaaatgaaagtaatccaaccagaagttgacctgcaaagtcatagtcaaaaaa |
224 |
Q |
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| T |
39047176 |
caagttttaatcacaatatgcacattactggtgttcatctacatattaaaaatgaaagtaatccaacccgaagttgacctgcaaagtcacattcaaaata |
39047275 |
T |
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| Q |
225 |
caaatgtttgttagattcttatggtgtaaa |
254 |
Q |
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| T |
39047276 |
caaatgtttgttagattcttatggtgtaaa |
39047305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 14722342 - 14722429
Alignment:
| Q |
40 |
tgtttctacaataccatatcgtattaatcacattgataatggttgcaatgaccaccactttatgttacaatgatcaagatttattacaa |
128 |
Q |
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| T |
14722342 |
tgtttctacattaccatatgatatttatcacattgataatggctg-aatgaccaccacttcacattacgatgaccaagatttattacaa |
14722429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 17601850 - 17601763
Alignment:
| Q |
40 |
tgtttctacaataccatatcgtattaatcacattgataatggttgcaatgaccaccactttatgttacaatgatcaagatttattacaa |
128 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||| || |||||||||||||| | |||| |||| ||||||||||||||| |
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| T |
17601850 |
tgtttctacattaccatatgatatttatcacattgataatggctg-aatgaccaccacttcacattacgatgaccaagatttattacaa |
17601763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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