View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0651_low_15 (Length: 217)
Name: NF0651_low_15
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0651_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 47299382 - 47299255
Alignment:
| Q |
1 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299382 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaa |
47299283 |
T |
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| Q |
101 |
tgcaccacattcgatcttatcacttcat |
128 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
47299282 |
tgcaccacattcgatcttatcgcttcat |
47299255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 47292775 - 47292648
Alignment:
| Q |
1 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaa |
100 |
Q |
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||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
47292775 |
taaggaagaagatactgcttctctagttcatcgatctttcttctttagagcttctgacatagctgcgcttcgtctcttggttccatttcaccttcgtcaa |
47292676 |
T |
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| Q |
101 |
tgcaccacattcgatcttatcacttcat |
128 |
Q |
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| T |
47292675 |
tgcaccacatttgatcttatcgcttcat |
47292648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 47267495 - 47267600
Alignment:
| Q |
23 |
ctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatca |
122 |
Q |
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||||| |||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
47267495 |
ctagttcatcaatctttcttctttaggacttcagacattgttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatca |
47267594 |
T |
|
| Q |
123 |
cttcat |
128 |
Q |
| |
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|||||| |
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| T |
47267595 |
cttcat |
47267600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 47283461 - 47283560
Alignment:
| Q |
24 |
tagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcac |
123 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||||| || | |||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
47283461 |
tagtccatcaatctttcttctttacactttctcacatagctgcaatccgtcacttgattccatttcaccttcgtcaatgcagtacatttgatcttatcac |
47283560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 47278925 - 47278967
Alignment:
| Q |
81 |
ttccatttcaccttcgtcaatgcaccacattcgatcttatcac |
123 |
Q |
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| T |
47278925 |
ttccatttcaccttcgtcaatgcagtacatttgatcttatcac |
47278967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 32731259 - 32731357
Alignment:
| Q |
24 |
tagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatca |
122 |
Q |
| |
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|||||||||||||||||||||| | | || || ||||||| | ||||| |||||||||| ||||||||| ||| ||||| ||||| |||||||||| |
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| T |
32731259 |
tagtccatcaatctttcttcttcacacctgctcacatagctgcgattcgttgcttggttccaattcaccttcatcattgcactacatttgatcttatca |
32731357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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