View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0651_low_2 (Length: 401)
Name: NF0651_low_2
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0651_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 11325322 - 11325684
Alignment:
| Q |
13 |
aatattatataacgatcagaatattagttacttgtgttagtgaataacaaaatattagactcaaatatcagaattttgattatgaatgtaattagagtga |
112 |
Q |
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| T |
11325322 |
aatattatataacgatcagaatattagttacttatgttagtgaataacaaaatattagactcaaatatcagacttttgattatgaatgtaattagagtga |
11325421 |
T |
|
| Q |
113 |
ccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatgacatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325422 |
ccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatgacatg |
11325521 |
T |
|
| Q |
213 |
taaaaatcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttctatt |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325522 |
taaaaagcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttctatt |
11325621 |
T |
|
| Q |
313 |
taaattatttttcaaattttcatccaaaatccacatc-aaagtacattatcatgtgaaaattg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
11325622 |
taaattatttttcaaattttcatccaaaatccacatcaaaaatacattatcatgtgaaaattg |
11325684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 11483343 - 11483705
Alignment:
| Q |
13 |
aatattatataacgatcagaatattagttacttgtgttagtgaataacaaaatattagactcaaatatcagaattttgattatgaatgtaattagagtga |
112 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11483343 |
aatattatataacgatcagaatattagttacttatgttagtgaataacaaaatattagactcaaatatcagacttttgattatgaatgtaattagagtga |
11483442 |
T |
|
| Q |
113 |
ccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatgacatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483443 |
ccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatgacatg |
11483542 |
T |
|
| Q |
213 |
taaaaatcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttctatt |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483543 |
taaaaagcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttctatt |
11483642 |
T |
|
| Q |
313 |
taaattatttttcaaattttcatccaaaatccacatc-aaagtacattatcatgtgaaaattg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
11483643 |
taaattatttttcaaattttcatccaaaatccacatcaaaaatacattatcatgtgaaaattg |
11483705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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