View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0651_low_3 (Length: 382)

Name: NF0651_low_3
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0651_low_3
NF0651_low_3
[»] chr5 (15 HSPs)
chr5 (1-370)||(39168800-39169172)
chr5 (72-362)||(40418245-40418529)
chr5 (72-370)||(39879768-39880066)
chr5 (75-370)||(39726372-39726667)
chr5 (75-370)||(38987659-38987948)
chr5 (24-362)||(39399821-39400144)
chr5 (240-370)||(3299487-3299620)
chr5 (240-370)||(3392380-3392513)
chr5 (72-196)||(3299640-3299767)
chr5 (72-196)||(3392533-3392660)
chr5 (246-370)||(1163693-1163817)
chr5 (246-370)||(1849919-1850046)
chr5 (75-182)||(1163564-1163674)
chr5 (75-182)||(1850065-1850175)
chr5 (242-348)||(40102209-40102315)
[»] chr4 (2 HSPs)
chr4 (75-370)||(25912130-25912422)
chr4 (59-312)||(44444596-44444838)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 39169172 - 39168800
Alignment:
1 ctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39169172 ctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaaga 39169073  T
101 gttgataatcagattcccacttatcctcaacaacaacaa---ttctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtc 197  Q
    ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39169072 gttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtc 39168973  T
198 gccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagtt 297  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39168972 gccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagtt 39168873  T
298 ttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39168872 ttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 39168800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 72 - 362
Target Start/End: Complemental strand, 40418529 - 40418245
Alignment:
72 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 171  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||||||| | || | |||||| ||||||||| |||||  |||||||| |||||    
40418529 agtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccattctcttcggcataactaatcttg 40418430  T
172 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccgg 271  Q
    || |||||||| ||||||||||||| |  |||||| ||||||| |||||||||| ||      |||||||||| ||||||||||||||||| ||||||||    
40418429 gtgatcaaaatggcagcaggaaggttgatattgatgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgg 40418336  T
272 attttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaa 362  Q
     |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
40418335 gttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagctaa 40418245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 72 - 370
Target Start/End: Complemental strand, 39880066 - 39879768
Alignment:
72 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 171  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| |||||    
39880066 agtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttg 39879967  T
172 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccgg 271  Q
     | |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||  ||||||||||| ||||||||||||||||| ||||||||    
39879966 ctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgg 39879867  T
272 attttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 370  Q
     |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
39879866 gttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 39879768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 75 - 370
Target Start/End: Complemental strand, 39726667 - 39726372
Alignment:
75 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 174  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
39726667 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 39726568  T
175 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggatt 274  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||  ||||||||||| ||||||||||||||||| |||||||| ||    
39726567 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggtt 39726468  T
275 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 370  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
39726467 ttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 39726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 75 - 370
Target Start/End: Complemental strand, 38987948 - 38987659
Alignment:
75 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 174  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
38987948 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 38987849  T
175 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggatt 274  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| ||      |||||||||| ||||||||||||||||| |||||||| ||    
38987848 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgggtt 38987755  T
275 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 370  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
38987754 ttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 38987659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 24 - 362
Target Start/End: Complemental strand, 39400144 - 39399821
Alignment:
24 gtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccactta 123  Q
    ||||| || |||||| ||||||||||||||| |  ||||||||||| ||| | |||||  |||||||| ||| ||||||||||||||||||| |||||||    
39400144 gtggttgggttgatttcggtacattgctgctgcgttgaaggtgagatgagggccttgtcttagatcttctaagaagagttgataatcagattgccactta 39400045  T
124 tcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggt---cgccattgata---ttggtgttag 217  Q
    |||  || ||||||   || |         |||||| || || |||||| |||||||||||||||||| | ||   ||||||||||    ||||||||||    
39400044 tccggaataacaactgatcca---------tcatcacaattagtcttggcaatcaaaattgcagcaggcaagtagccgccattgatgatgttggtgttag 39399954  T
218 ctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtc 317  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
39399953 ctcctcctcc------------agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtc 39399866  T
318 attatttccaaaatcttccacacgagcaaccacggcatcagctaa 362  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
39399865 attatttccaaaattttccacacgagcaaccacggcatcagctaa 39399821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 3299620 - 3299487
Alignment:
240 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 336  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
337 acacgagcaaccacggcatcagctaaccgatatt 370  Q
    ||||||||||||| |||||||||||| |||||||    
3299520 acacgagcaaccatggcatcagctaaacgatatt 3299487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 3392513 - 3392380
Alignment:
240 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 336  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
337 acacgagcaaccacggcatcagctaaccgatatt 370  Q
    ||||||||||||| |||||||||||| |||||||    
3392413 acacgagcaaccatggcatcagctaaacgatatt 3392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 3299767 - 3299640
Alignment:
72 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
3299767 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3299668  T
169 ttggtaatcaaaattgcagcaggaaggt 196  Q
    ||||| |||||||| |||||||||||||    
3299667 ttggtgatcaaaatggcagcaggaaggt 3299640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 3392660 - 3392533
Alignment:
72 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
3392660 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3392561  T
169 ttggtaatcaaaattgcagcaggaaggt 196  Q
    ||||| |||||||| |||||||||||||    
3392560 ttggtgatcaaaatggcagcaggaaggt 3392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 1163693 - 1163817
Alignment:
246 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 344  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
1163693 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 1163791  T
345 aaccacggcatcagctaaccgatatt 370  Q
    ||| | ||||| |||||| |||||||    
1163792 aactatggcattagctaaacgatatt 1163817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 1850046 - 1849919
Alignment:
246 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttccacacga 342  Q
    ||||||||||||||||| |||||| | |||||||||| |||  ||||||||  |||||||||||||||||   | ||||||||||| ||||| |||||||    
1850046 gtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacga 1849947  T
343 gcaaccacggcatcagctaaccgatatt 370  Q
    ||||| | ||||| |||||| |||||||    
1849946 gcaactatggcattagctaaacgatatt 1849919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 1163564 - 1163674
Alignment:
75 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 171  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||| |||||||||    |||| | || ||||| |||||    
1163564 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttg 1163663  T
172 gtaatcaaaat 182  Q
    |||||||||||    
1163664 gtaatcaaaat 1163674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 1850175 - 1850065
Alignment:
75 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 171  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||  || || |||||||||    |||| | || ||||| |||||    
1850175 gtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaatcttg 1850076  T
172 gtaatcaaaat 182  Q
    |||||||||||    
1850075 gtaatcaaaat 1850065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 40102209 - 40102315
Alignment:
242 acaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacg 341  Q
    ||||||||||||||| ||||| ||||||  |||| |||| || ||| |||||||| ||||| | |||  | |||||||| ||||||||||||| ||||||    
40102209 acaagtcataaccaaaagcatggtcaccaaatttcaaaagataacccagatgagtcttgatattaaatctcgtgtcattctttccaaaatctttcacacg 40102308  T
342 agcaacc 348  Q
    |||||||    
40102309 agcaacc 40102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 75 - 370
Target Start/End: Original strand, 25912130 - 25912422
Alignment:
75 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 174  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||  |||||||| |||||||     
25912130 gtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcttcggcataactaatcttggtg 25912229  T
175 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggatt 274  Q
    |||||||| |||||| |||||| |  |||| | ||||||||||||||   |||||||  ||||| ||||| ||||||||||||||||| |||| ||| ||    
25912230 atcaaaatggcagcatgaaggttgttattggtgttggtgttagctcc---tccttctcctcctctagacaggtcataaccaagagcatggtcatcgggtt 25912326  T
275 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 370  Q
    ||| |||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||| |||||||    
25912327 ttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacatcatcagctaaacgatatt 25912422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 312
Target Start/End: Original strand, 44444596 - 44444838
Alignment:
59 tgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatc 158  Q
    ||||||||||| ||| | |||||| ||||| |||||| || |||| ||||||||||||| | ||||||| ||||||||| ||     |||| ||||||||    
44444596 tgaaggtgagatgagcggcttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaactatgt---cattctcttcatc 44444692  T
159 ataactactcttggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaaga 258  Q
     |||||| | ||||||||||||||||||||| ||||||||||| || | ||| ||||||||| ||||| | ||   |||  ||     ||||||||||||    
44444693 gtaactagtattggtaatcaaaattgcagcacgaaggtcgccaatggtgttgatgttagctcttcctcttact---cctatag-----tcataaccaaga 44444784  T
259 gcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagtt 312  Q
    ||||||||||| | |||||||||| |||| |||||||| |||||||||||||||    
44444785 gcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

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